Yersinia hibernica LC20: LC20_06540
Help
Entry
LC20_06540 CDS
T03179
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
yel
Yersinia hibernica LC20
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yel03019
]
LC20_06540
Messenger RNA biogenesis [BR:
yel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LC20_06540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GGDEF_2
Claudin_2
Motif
Other DBs
NCBI-ProteinID:
ATX62703
UniProt:
A0A7U5PGS2
LinkDB
All DBs
Position
528050..529969
Genome browser
AA seq
639 aa
AA seq
DB search
MRFTTKLSVFMTLLVVLAMCLVLLGSTASFFYLCQKKMEHRLQSIVTAYDQSLLVYPADK
EREWLPIMMRTLGVLEVSIQNKDSTLYQLKLPAIYAPWNGQSRYRSLVVPMVHQPGASMH
FTYIDPLSSYARSLYAAAILSLAVIIIALTLLLSFRWLREQTAGQEKLERRAKRILSGER
EYAMNNDGHEWPPCASRAIDHLLAELIEAREERNRVDTLIRTFAAQDAKTGFSNRHFFDN
QLTTQMEESGAHGVVMMVQLPDFDSLIETDDHQQVQELMHSLINLLSTFVTRHPSALLAR
YHHSDIAILLPHKTLKDADVMAAQLVHAVGSLPEPHVIDRESLLHIGIVAYRNGDSAEQI
MDNAGQATKNAAMYGGNGWYVYDTQVAEKGRGSVKWRTLLEQTLLNGGPRLYQKPVVTVD
GKIHHREIISRIYDGEQELRAAEFTPLVQLFGLGERYDRQKIDRIIPLLALWPDETLAFS
ISVDSLLQRPFQRWLRDTLLQCRKSDRERIIFELAEADVCQYISQIRPMMRLLLGVGCKV
MVSQAGLTVVSTSYIKSLRVEMIKLHPGLVRSINLRYENQLFVESLTGACAGTHAKVFAA
EVLTREEWQTLKEKGVYGGQGNFFAPPTLLSPGKKKYSY
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttacaaccaaactttctgtatttatgactctgctggtcgtattggcgatgtgt
ttagtgctactgggtagcacggcaagttttttttatttgtgtcagaaaaaaatggagcac
cgcctccagagtattgtcacagcttatgatcaatcattgctggtgtatcctgctgataaa
gaacgcgaatggttacccataatgatgcggacgctgggtgttttggaagtgagcatccag
aataaagacagcacgttatatcaactaaaattgcctgctatttatgccccttggaacggt
caaagtcgttaccgcagcttggtcgtccctatggtgcaccagcccggggcttcaatgcat
ttcacttatattgaccccttaagcagctatgctcgctctctttatgccgccgctatttta
tcgctggcagtgataattatcgcgttgacactcctgttaagtttccgctggttacgtgaa
cagaccgcaggtcaggaaaaattggaacggcgagccaagcgtattcttagtggtgaacgt
gaatacgccatgaataacgacggccacgaatggcctccttgcgccagccgcgccattgat
catttattggcagagctgatagaagctagggaagagcgcaatcgcgttgatactttaatt
cgcacttttgccgcacaggatgccaaaacaggattcagtaaccgccatttttttgataac
caactgacgactcaaatggaagaatcgggtgcccacggggtggtgatgatggtgcagtta
ccggattttgacagtttaattgaaacggatgatcaccagcaggtgcaagaactgatgcat
tcgctgattaatctgctttctacttttgtcacgcgtcacccctccgcattgctggcccgt
tatcatcacagtgatattgcgattttactccctcataaaacgcttaaagatgctgatgtc
atggctgcacagctagtgcatgcagttgggtcattgcccgaaccccatgttattgaccga
gaatcactgctgcatattggcattgtggcgtatcgcaatggcgattcagcagaacaaata
atggataatgctggacaagcgaccaaaaatgccgcgatgtatgggggaaatggttggtat
gtttacgacacccaagttgcagaaaaagggcgtggtagcgtcaaatggcgcactttgctg
gaacaaacattgcttaacggtggcccacggctttaccagaaaccggttgttacagttgac
ggcaaaattcaccaccgtgaaattattagtcgcatatatgatggcgagcaagaattgcgg
gccgctgaatttacgccactggtgcagttattcggtttgggtgagcgttatgaccgccaa
aaaattgatcggataattcctttattagctttatggccggacgaaactctggcattttct
atcagcgttgattcattattacagcgtcctttccagcgctggctgcgggatacgttgttg
caatgcagaaaatcggatagagagcgaattatctttgaacttgcagaggcagatgtgtgt
caatatatcagccaaatccgtccgatgatgcgtttgttactgggtgtcggttgcaaggtc
atggtgtcacaggctgggttgacggttgtcagtacgtcatatattaagtctctccgggta
gaaatgattaaacttcatccgggattagtaagaagcattaatttacgttatgagaatcag
ctgtttgtcgagagtctaaccggtgcttgtgcgggaacgcatgcgaaagtttttgccgca
gaagtgctgacccgtgaagagtggcaaactctgaaggagaaaggtgtttacggtggacag
ggcaatttttttgctccgccgacgcttttaagccctggaaagaaaaaatattcgtattaa
DBGET
integrated database retrieval system
