Yersinia hibernica LC20: LC20_06985
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Entry
LC20_06985 CDS
T03179
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
yel
Yersinia hibernica LC20
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yel03400
]
LC20_06985
DNA repair and recombination proteins [BR:
yel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LC20_06985
Archaeal homologous recombinant proteins
LC20_06985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
SMC_N
cobW
ABC_tran
AAA_21
nSTAND3
NTPase_1
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
ATX62761
UniProt:
A0A7U5PGJ6
LinkDB
All DBs
Position
complement(1192269..1195958)
Genome browser
AA seq
1229 aa
AA seq
DB search
MRILSLRLKNINSLQGEWKIDFTAEPFASSGLFAITGPTGAGKTTLLDAICLALYHQTPR
LNVTPSQNELMTRHTAESLAEVEFEVKRTRYRAFWSQRRAKNSPEGNLQAPKVELALCED
GKILADKVRDKLDMIAAITGLDFGRFTKSMLLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSEHVFEQHKQAKLALDTLHQRASGIELLNEEQRLALAQQLDALSEQEKQFTAEQHV
NQNQINWLTHWQQQQKNVLEYQQQQQLIEQEYQQAQPELQRLARSEPAEKLRPLLHERAR
SLQDLQQIQLRVTTLTAQQKQLQTQLTPLAHALEQANLARQQQAARQHEQETLIEQKVVP
LDNIIAQQQHALMLLATQLQQLRSKEQHSKQQVELNEQQLKQTHQRWQQLTEYTHQYAHH
QHWEKNLPLWREQFRQLHIQQKQLVESEQQLQQEVALLSSLQQQIATLNEQEKQQQTALA
QANAQAGSIQQQLSALEQQQPLAQLHQQLSELQQQRPVRQQLAALSPLAQQVQALHDKQQ
QQLAGQQQQRQQLEHQLAEKRQLYKQQKQHLTDLEALLESEKKIVKLEAERAKLQPGKAC
PLCGALDHPAIIEYQSVKPSETAMRVEELRLQVEQLFTVGTELRTQVANAQQQQLRLEQE
LQYSQQQLTDYQQQWQTLTQPLALTFALNEPTALAAWLQQQEQSEQICQQRRTEYEQLNQ
QYQQAKDILAQVEQQQQKHQQQLAFVIQRQQDAQQSHQKLLLQQQHQQAEWVKTRQDFSH
TLAELSLSLPETDQQQNWLSLREEENQHWQQYQQELQQLALAQKALEIQIENERRHLQEC
IDQLSALSQQHQQAETLLQQQQQQRQALFGDIQVTEARQLLRQQQQQAELAQQNASHALQ
QAQSQLNLLSGELAALLQQKQQSQLRAAAAQTELQHALADSEFKDEDALTSALLSEEERQ
RLQQLKQQLSERLQQAHIRQQQASDALAQLILSCPAGVSQTSELAILQQRSEQLLAQLKA
NTLRQGELRNQLESDTVRRGNQHTLFEQIERSQQQYDDWSYLNHLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYQLQRKTSDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDNIFRVNQD
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttaagtttacggctgaaaaatattaattctctacaaggtgaatggaagatt
gatttcactgcagagccctttgccagcagcggattattcgctatcaccggcccgacaggg
gcgggtaaaaccacgctgcttgatgccatttgtctcgcgctataccaccaaactccgcgt
ttgaatgtcactcctagccaaaacgaactgatgactcgccacactgcggagtcgctagct
gaagttgaattcgaggtaaaaagaacacgttatcgcgcgttctggagccagcgccgtgcc
aaaaatagcccggagggaaatctacaagcccctaaagttgagctggcgctgtgtgaagat
ggcaaaattctggcggataaagtgcgtgataagcttgatatgattgctgcgatcaccgga
ctggattttggccgtttcaccaaatcaatgttgctatctcaggggcaattcgccgcgttc
cttaatgccgatgctaatgaccgcgcggaattattggaagaattaaccggcaccgatatc
tatgggcggttatctgaacatgtttttgaacagcataagcaggccaagctcgcgctagat
acattgcaccaacgtgccagtggtattgagcttcttaatgaagagcagcgtttagcttta
gcacaacaattagatgcactcagtgaacaagaaaaacagttcaccgcagagcaacacgtg
aatcaaaaccaaataaattggctcacccattggcaacagcagcaaaaaaatgtactcgaa
tatcaacaacagcagcagctcattgagcaagaatatcaacaagcacagcccgaactgcaa
cgactggcccgcagtgaacccgcagaaaagttacgccccttattgcatgagcgcgcacgt
agcctacaggatttgcagcagatacaactgcgtgttaccacactgacagcacaacaaaag
caacttcagacacaacttacaccactagcccacgcactggaacaggccaatcttgctcgc
caacagcaagcagctaggcagcatgaacaagaaacactgatcgagcaaaaagtcgttcca
ctggataacattattgctcaacagcagcacgcattaatgctacttgccacacaactacag
cagttacgtagtaaagaacagcatagtaaacaacaagttgaattaaatgagcaacagtta
aagcaaacccaccagcgctggcaacaactgacggagtatacccaccagtatgctcatcat
cagcactgggaaaaaaatctacccttgtggcgagagcaatttcgccaattacatattcag
caaaaacaattggttgaaagcgagcagcaattacagcaagaagtcgcattgctcagctcc
ttacaacagcaaatcgccacactaaatgaacaagaaaaacaacagcaaaccgcattagcc
caagccaatgctcaggcgggcagcattcagcaacaattgtcagcacttgaacagcaacaa
cctttagcacaattacaccaacagctgtctgaactccagcaacagcggccagtgcgacaa
caattagccgcgttatcgccgctggcacaacaagtacaagcgctgcatgacaaacaacag
caacaattagcgggtcaacaacagcagcgacaacaactcgaacatcagttggcagaaaaa
cgtcagttatataaacaacaaaaacaacatctgacggatctggaagctttactggaaagc
gaaaaaaaaatagtcaagttagaggcagagagagccaaattgcaaccagggaaggcatgc
ccattatgtggggcattggatcaccccgctattattgagtatcaatcagtcaaaccctca
gaaacggccatgcgagttgaagaactgcgacttcaggttgagcagcttttcactgtagga
acagaattacgcactcaggtagcaaatgcacaacagcagcagttacgcctagagcaagag
ctacagtacagccagcagcaattgactgattatcaacaacaatggcaaacactgacacaa
ccactggcgctgacatttgccttgaatgaacctacggctttagccgcctggttacagcaa
caggaacaatcagagcaaatctgccaacagagacggactgaatatgaacagctgaatcag
caatatcaacaagctaaagatattctggctcaggtagaacagcagcagcagaaacatcag
cagcaattagcattcgtgattcagcgccaacaagatgcccagcaatctcaccagaaactg
cttttacaacagcaacatcaacaagctgagtgggtaaaaacgcgtcaagattttagtcat
accctggcagaactatcactctcgctacctgaaacagaccaacaacagaactggctatct
ctgcgagaagaagaaaatcaacactggcagcagtaccagcaagagctgcagcagttggct
ctagcccaaaaagcgctggaaattcagattgaaaatgagcgtcgccatttacaagaatgc
attgaccagctctcggcgctcagccaacagcatcaacaagccgaaaccttgttacagcaa
caacagcaacaacgccaggcactgtttggtgatattcaggtgacagaggcacgccagtta
ttacgccaacagcagcaacaggccgagttggcacagcagaatgcatctcacgcgctgcaa
caggcacaatctcaacttaacttgctatccggtgagttagcggcgctgctacagcaaaaa
cagcaaagtcagctgcgcgcggctgcagcccaaactgaattacaacacgcattggcagac
agtgaatttaaggatgaggatgccttaaccagcgcattactcagtgaagaagaaaggcaa
cgtttgcagcaattaaaacaacaattgagcgaacggctgcaacaagcacacatccgccag
cagcaagccagtgacgcgctagcacaacttatactctcttgccccgcaggggtcagccaa
acctccgaattggcaatattacaacagcggtcagagcagttactggcccaactgaaagcc
aatacattacggcaaggcgaattacgcaatcagttagaaagcgacacggttcgccgtggc
aaccaacatacgttatttgagcaaattgaacgtagtcagcaacaatatgatgactggagc
tacctcaatcatttaatcggttccaaagaaggcgataaattccgcaagtttgcacaaggt
ctgacactcgatcatttagtctatctggcaaataaccaactcagtcggctgcatggccgc
taccaactgcagcgtaaaaccagtgatgcgctggagctgcaagtggtggacacctggcaa
gcagacgctatccgtgatacccgcacactgtcagggggagaaagcttcttagtcagttta
gccctagccttggcgctatcagatttggtcagccataaaaccagtattgactcgctattc
cttgatgaaggctttggcaccttggatgcagagacgctggatactgcactggatgccctt
gatagcctgaatgcctcaggtaaaaccattggggttatcagccatgtcgaagcaatgaaa
gaccgaattccagtgcaaattaaagttaagaaagtcaatggattgggggttagccgctta
gataatatcttccgagtcaatcaagactga
DBGET
integrated database retrieval system
