Yersinia hibernica LC20: LC20_07815
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Entry
LC20_07815 CDS
T03179
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yel
Yersinia hibernica LC20
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yel03019
]
LC20_07815
Enzymes [BR:
yel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LC20_07815
Messenger RNA biogenesis [BR:
yel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LC20_07815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
PhoH
T2SSE
ResIII
YfbU
NTPase_1
Ubiquitin_3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ATX62862
UniProt:
A0A7U5PGQ0
LinkDB
All DBs
Position
complement(2440492..2444379)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSSLAALSSQLGELMLRDQQRMRRRLQGTRKVNNPDAIEAITRDIAAEIATAMQRVISR
RAACPAITYPENLPVSQKKQDIYDAIRDHQVVIVAGETGSGKTTQIPKICLELGRGIKGV
IGHTQPRRLAARTVANRIADELDTSLGGCVGYKVRFNDHVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPIVDDADDVERDQLQAIFDAVDELGRESPGDILIFMSGEREIR
DTADALMKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEPDFLSRPEFT
DPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSIQDPRERPTDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGIPVNSVAADYRSIHTAILTGLLSHIGQKDFEKQEYTGARNARFAIFPGSGLFKKPP
KWCMVAELVETSRLWGRIAARIEPEWIEPVAQHLVKHHYSDPHWEKAQGAVMASEKVTLF
GLPIVTERKINYGPIDPPLCRELFIRHGLVEGDWQTRHAFFRANLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRIGRDVISARHFDSWWKKVSQTQPELLNFEKTMLIKDGANKVNP
LDYPNFWYQEALKLRLSYQFEPGADADGVTVHIPLPILNQVQEQGFDWQIPGIRRELVVA
LIKSLPKPVRRNFVPAPNYAEAFLARVTPLETSLLDALERELRRMTGVTVSRESWQWEQV
PDHLKMTFRVVDDKNRTLREGKDLAALQLQLQEKVQETLSAVADDGIEQNNLHIWSFGSL
PVCYEQRRGGYEVKAYPALVDEKDSVAIRLFDTQTQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGKVMDLIDDCIACGVDKLVAQYGGPVWQEADFARLQEKVRAEL
NETVVEVAKQVEQILTTVFSINKRLKGRVDISQALALSDIKAQLSGLVYRGFVTNNGWKR
LPDTLRYLHAIERRMEKLAVDPHRDRAQMQRVEHVQQMWQQWLNKLPPKRQQDEDVKEVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcactcgcagcattatcttcccaactcggtgagttgatgctccgtgaccaa
cagcgcatgcggcgtcggttgcaaggcacccgaaaagttaataatcccgatgcaatagaa
gcgattacccgtgatatcgccgctgaaattgcgaccgcgatgcagcgggttatcagccgc
cgggcagcttgcccggctatcacttatcctgaaaatttacccgtcagccagaagaaacag
gatatttatgatgctatccgcgaccatcaggtggtcatcgttgcgggtgaaaccggctcg
ggtaaaaccacgcaaataccgaaaatttgtctggagttagggcgcggtatcaagggggtg
attggtcatacccagccacgccgccttgccgctcgtactgtggcaaatcgtattgctgat
gagctagacacatccctgggcggctgtgtcggttataaagttcgctttaatgaccacgtg
ggcgagaatacgttggtgaagttaatgaccgacggtattttgctggctgaaattcagcaa
gaccgcttgctgatgcaatatgacactttgattattgatgaagctcatgaacgcagctta
aatattgatttcatcttgggctatttgcgcgagttattgcccaaacgccctgatttgaaa
gtgataatcacctcagcgacaattgatccgcagcgtttttctcgccatttcaataatgcc
cccattattgaagtctcggggcgcacctatccggtagaagtgcgctatcggcctattgta
gatgatgccgacgatgttgagcgcgatcagctacaggctatttttgatgcggtagatgaa
ctgggccgggaaagtcctggcgatattctgatctttatgagtggcgagcgtgaaattcgt
gacactgctgatgcgctaatgaaacagaatttgccgcataccgaagtgctgccattatat
gcccgtttatctaatagcgagcaaaatagggtatttcagtcacaccacgggcggcgcatt
gttctggcgaccaacgtggcggaaacctcgctgactgtgcctggcatcaagtatgttatt
gaccccggcaccgcgcgcatcagccgctacagctttagaaccaaagtacagcggttgccc
attgagccgatttcgcaagcttcagctaaccagcgcaaaggccgctgtggtcgtgtgtcg
gacggcatctgtattcggctctattcggagccagatttcctttcacgccctgaatttact
gatccggaaattctgcgcactaatttagcctcggttattttgcaaatgaccgccctgggg
ttaggtgatatcgccgcctttccctttgtcgaagccccggataagcgcaatattcaagat
ggtgttcggctactggaagagctgggcgcgatacaaacggccagtaatggtcatcagcaa
ttaacaccgttaggccgccaactggcgcaactgccggtcgatccgcgcttggcgcgcatg
gtgctggaagcacaaaaaagtggcagtgtgcgggagttgatgattattacctccgccttg
tctatccaagacccccgcgagcgcccgacagataaacaacaagcctcggatgaaaaacac
cggcgttttgccgataaagactctgatttcctagcatttgttaatttatgggattatctg
aaagagcagcaaaaagagctgtcatcggcgcagtttcgcaaactttgtcgcagcgacttc
ctgaattatctgcgggtgcgggaatggcaagatatctatacccagctccggcaggtggta
aaagaactgggcatcccggtcaatagcgttgcggcggattatcgcagcattcacacggcc
attttgacggggttattgtcacatatcggtcaaaaagactttgaaaagcaagagtatacc
ggtgcgcgtaatgcgcgttttgctatcttccctggctctggtttattcaagaagccaccg
aaatggtgcatggttgccgagctagtcgaaaccagccgcttatgggggcgcattgctgct
cgtattgagccggaatggatagagcccgtggcgcagcatctggttaaacaccactatagc
gacccgcattgggagaaagcgcaaggggcggtgatggccagcgagaaagtgacgttattt
ggcttgcctatcgtcacggagcgcaaaattaattatggcccaattgacccgccactgtgc
cgtgaactgttcatccgccatggtttggttgagggcgactggcagacgcgccatgccttt
ttccgggctaatttaaagttactggccgaagttgaagagttggagcataaatcccgacgg
cgcgacattctggttgatgatgagacactgtttaatttctatgaccagcggattggtcgc
gatgttatttccgcacgccattttgatagttggtggaaaaaagtcagccaaacgcaacca
gagctactcaactttgaaaaaaccatgcttatcaaggatggcgcgaacaaagttaacccg
ctggattacccgaatttttggtaccaagaggcacttaaattacggctttcttatcaattt
gagccgggtgccgatgccgatggggtcacggtacatattccgctgccaatcctaaatcag
gtgcaggaacaaggttttgattggcaaatcccaggcattcgccgtgaactggtcgtggcg
ctcatcaaatcgctacctaaaccggttcggcgtaattttgtccccgcaccgaactatgca
gaggcttttttagcccgagtgacgccgctggaaaccagtctgctggatgcattagaacgt
gagttacgccgcatgactggcgtgacggtgtcacgtgaaagctggcaatgggagcaagtg
cccgatcatctaaaaatgaccttccgggtagtcgatgataagaaccgcaccctgcgcgag
ggcaaggatcttgccgccttgcagttacagctgcaagagaaggtacaagagacgctttct
gctgtggccgatgatggtattgagcaaaataacttacatatctggagcttcggctcactg
cctgtgtgttacgaacaacgccggggtggatacgaagtcaaagcatacccggcactggtt
gatgaaaaagacagtgttgccatccgcttgtttgatacgcaaactcagcaacaacaggca
atgtggcagggcacgcggcgtttgttattgctcaatattccctcacccattaagtactta
catgaaaaactgccgaacaaatccaaactcggcctctatttcaatacttatggcaaagta
atggatctgattgatgattgcattgcttgtggggtggataaactggtcgcgcaatacggt
gggccggtgtggcaagaggctgattttgctcggttacaagaaaaagtccgcgcagagtta
aatgaaacggtggtggaggtagccaagcaagttgaacaaattctcaccaccgtattcagt
attaataagcgcttaaaaggccgagttgatatctcgcaggccctggcactttcagatatc
aaagcacagcttagtggcctggtttatcgcggttttgtcacgaataatggctggaaacgg
ttaccggataccttacgctatctgcacgccatcgagcgccggatggaaaagttagccgtc
gaccctcatcgtgatcgcgctcaaatgcaacgagtggaacatgtgcagcagatgtggcag
caatggctgaataaactgccgcctaaacgtcaacaagatgaagatgttaaagaagttcgt
tggatgattgaagagctgcgggtgagcttatttgcccaacaattggggacaccttacccg
atttccgacaaacgtattttgcaaactatcgaacaactctctgcttga
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