Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE0636
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Entry
YE0636 CDS
T00469
Symbol
rapA
Name
(GenBank) RNA polymerase associated helicase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yen03021
]
YE0636 (rapA)
Transcription machinery [BR:
yen03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
YE0636 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAL10748
UniProt:
A1JJG0
LinkDB
All DBs
Position
complement(730023..732929)
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMVTLLFPATGENRLYARNDSPITRVMFNPGDT
ITHHEGWQLKVEEVSEENGLITYIGTRLDTEETGVSMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLSGRAERILIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSTNPFETEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFINEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELINEQDIEPLLKAANSQTEDSEAARQELVTMLMDRHGTSRILFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMGAKKSLEARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLIANRNEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLENTAQAVLVRWYHEGLDAFEHTCPTGRTIYDSGYQELITYLATPSEQ
EGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAEIIADQDNDVNLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPQDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDKNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHAMLQQAEALVEEQAR
LLIEAAKHEADDKLSAELARLEALKAVNPNIRDDEIETLEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaacttggattgggt
actgtcgttgccattgacgtacgcatggtcaccttactgtttcccgcaaccggtgaaaac
cgcctttacgctagaaatgattctcccattacccgtgtcatgtttaatccgggcgatacc
atcactcaccacgaaggctggcagctgaaagtggaagaagtgtctgaggagaacgggctg
attacctacattggtactcgcctggataccgaggaaaccggcgtttccatgcgtgaagtt
ttgctcgatagcaaactgacttttagcaaaccgcaagacagattatttgccggtcagatc
gatcgcatggatcggtttgccctgcgttttcgcgcccgtaaataccaaagtgagcagttc
cgcctgccctggagtggtttgcgcggcatccgtgccagcttgatcccacaccaattacat
atcgcctatgaagtgggtcaacgccatgcgccacgagtcttgctggccgatgaagtaggg
ttgggtaaaactatcgaagcggggatgattatccatcagcaactgctgtcaggccgtgct
gaacgtatcctgatagtggtgccggaaagcttgcaacaccagtggctggtggaaatgctg
cgccgcttcaatctgcgcttctcattgtttgatgacagccgctattctgaagccctgctc
gacagcaccaatccgtttgaaactgaacaaatggtcatttgctcgctggactttgtgcgc
cgtaataaacagcgtctggagcaattagccgatgcgtcctgggatctgctggtggtggat
gaagcacatcatctggcctggagtgaagaagcaccgagccgcgaatatcaagttattgaa
caactggccgagcatattcccggcgtcttgctgctgaccgcaacaccagagcaactgggc
cagcagagccactttgctcgcttgcgtctgcttgatcctgaccgcttccacgattacgaa
gaatttattaatgagcagcaaaaataccgcccaattgccgatgctgtcacattgctgctg
ggtggtgagcgcttaactgacgataagctgaatctgctcggtgagctgattaacgagcag
gatatcgagccactgctgaaagcggcaaacagccaaactgaagatagcgaagcggcacgt
caggagttggtgaccatgctgatggacagacatggcaccagccgcatcttgttccgtaac
acccgtaatggggtgaaaggcttcccacaccgtgtcttgcatcagattaagctgccactg
ccaactcaataccaaacagcaattaaagtgtcaggcattatgggtgccaagaaaagcctc
gaagcacgagccaaagacatgctttatccagagcaaatctaccaagaattcgaaggcgaa
aacgccacttggtggaactttgacccacgggttgaatggctgcttaactacctgattgct
aaccgcaatgagaaagtgctggttatttgtgcacaagccgccaccgcattgcagcttgaa
caagtgctgcgcgagcgcgaagctatccgtgccgcagtattccatgaaggtttatcactg
attgaacgtgaccgcgcggcggcctactttgcctccgaagaagacggcgcacaggtatta
ttgtgttcagaaatcggctctgaagggcgtaacttccagtttgcctgccaactggtgatg
ttcgatttaccttttaatccggacttgcttgagcaacgtattggtcgtctggataggatc
ggccaaaaccgtgaaatccaaataatggtgccgtatctggaaaataccgcgcaggcggtg
ctggtacgctggtatcacgaaggtttggatgctttcgagcacacctgcccgacgggccgc
actatttatgacagcggttatcaagaattgattacttacctggcaacgccaagtgagcag
gaagggctggatgaatttatccacacctgccgccagcagcatgaagggctgaaactgcaa
ttggaacagggccgtgaccgcttgctggagatgcactccaacggcggcgaacatgggcaa
gaactggcagaaatcattgcggaccaagacaatgacgttaatttagtcagttttgcgctc
aacctgttcgatattgtcgggatcaaccaggaagatcgcagcgacaatttgattgtgctg
acgccatctgaccatatgctggtgccagatttcccaggattaccacaggatggttgcacg
gtgacatttgatcgcgaacaggcattatcgcgcgaagatgctcagtttgtcagttgggaa
cacccgatcatccgtaacggtttggatctaatcctctccggtgacaccggaagctgtgcg
gtttctctgttgaaaaacaaagcattgccggtcggcactctgctcgctgaattggtctat
gtggtcgaagcacaagcaccgaaacacttgcaattgacccgcttcttacccccaacaccc
gtacggatgctgatggataagaacggcaccaacctggcagcacaagtagaatttgaaagc
ttcaatcgtcagttgaatgccgtcaatcgccatacctccagcaaactggtcaacgcggtt
cagcaagaagttcacgcaatgttgcaacaagcagaagcactagttgaagaacaggcgcgt
ttgctgattgaagcagccaagcatgaagcggacgataaattgagtgccgagctggcacgt
ttggaagccctgaaagcggttaaccccaatattcgggatgacgaaatagagactctggaa
cataaccgtaaaatggtgctggaaaacctcaatcaggcgggttggcgtttggatgccatt
cgtctggtggtggtgacacaccagtaa
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