Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE1627
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Entry
YE1627 CDS
T00469
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE1627 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yen03019
]
YE1627 (rne)
03009 Ribosome biogenesis [BR:
yen03009
]
YE1627 (rne)
Enzymes [BR:
yen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YE1627 (rne)
Messenger RNA biogenesis [BR:
yen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YE1627 (rne)
Ribosome biogenesis [BR:
yen03009
]
Prokaryotic type
rRNA processing factors
YE1627 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAL11701
UniProt:
A1JN49
LinkDB
All DBs
Position
complement(1830922..1834452)
Genome browser
AA seq
1176 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
ESAPAAANVKPTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNE
NRRNDRRNPRRQNNGRKDRGDRTPREGRDNSSRDNNARDNSTRDNGNRDNANRDNSNREG
RDDQRRNNRRPAQQATAPQAQTEVVEADKTQREEQPARRGDRQRRRPQDDKRQVSQDVKA
KVDADVVTAVVEEAQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNVLESSVSEPVSHI
AAPVVQEEVKLLPQASSQADDEATNDRNSNNENGMPRRSRRSPRHLRVSGQRRRRYRDER
YPTQSAMPLAGAFASPEMASGKVWVRYPVAQPFEPAFVENPVEEQQPVEYVQEVTAVVEQ
VAVVAAPVVAAAPVAAAVAETVVPTPAPQHKPGGSSSSAAAVPGRAPVVVETAIVETAIV
ETAMVETVTVAPIVETHAVEEPTQVTEIAPAAETITAVEPVIEDAVATETVVEATIEPVA
VMEEAVTQEPVVEETAAVVDDVTVAEKAVVEEAVVEEAIVEDVTVEEAVVEALIVAETVV
EDSVAEEATVTESPTDTAPVAVAPQQPVVAHPEGVLFKHYASAPMTKAPAPDYQPASPSQ
GHWERPAFDFAGKGSAGGHAAATKATAPATKPQSVE
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggtaaaatcacccgaatcgaacccagtctggaagccgcttttgttgattac
ggcgctgaacgacatggttttctcccattaaaagaaatttctcgcgaatatttccctagt
aattattcctctcatggccgcccaaacatcaaagatgtgctgcgcgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggtaataaaggtgccgcactcacgactttcatc
agcctggcaggtagttatttagttctgatgcctaataacccacgtgctggtggtatttct
cgccgcatcgaaggtgatgaccgcactgaactgaaagaagccctatcctccctgcaattg
ccagatggcatgggtttgattgtgcgtaccgccggtgtaggtaaatctgcggatgcgctg
caatgggacttatcattccgtctgaagcactgggatgcgattaaaaaagccgctgaaggc
cgccctgcgccattcttgatccatcaggaaagtaacgtaattgttcgtgctttccgtgat
tatctacgcccggacatcggcgaaatactgatcgataaccctaaagttctcgaactggct
aaagagcatatcgcagcgcttggccgcccggatttcagcagcaaaatcaaattgtatagt
ggcgaaatcccattattcagtcactaccagattgagtcacagattgaatctgcgttccaa
cgtgaagtgcgtctgccttccggtggttctatcgttattgataccaccgaagccctgaca
gcgattgatatcaactccgcacgtgctacccgtggtggagatatcgaagaaacggcattc
aataccaaccttgaagccgccgatgaaattgcccgtcagttgcgtctacgtgacttaggt
ggcctgattgtcatcgactttatcgatatgacaccggtacgccaccaacgtgaagtagaa
aaccgcctacgtgatgccgttcgtcaagaccgtgcgcgtatccagattggccgcatctct
cgcttcggtttactggaaatgtcccgccagcgcctcagcccatcactgggtgagtcaagc
caccatgtgtgcccacgctgtagcggtaccggtaccgttcgtgacaacgaatctctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccattgtgccggtacaaattgcatcgtatctgctgaacgaaaagcgtgaatctgttaat
gccatcgaaaaacgccagggtggtgtgcgggcagtgatcgtaccaaacgatcagatgcaa
acgccgcattactctgtacttcgtgtacgcaaaggcgaagaagtcccttctctcagctat
ttgctgccacagctgcatgaagctgaaatggcacaaccgttggaagaagcgaccatcgaa
cgtaaacgcccagagcaacctgcgctggcgacgttctctctgccaacagaagtgccacca
gagtcagcccctgctgctgcgaatgttaaaccaacagccgcaccacaggccgcaacagct
gcggtggcagaacaacctggtttccttagccgcctgttcagtgggctgaaaggtctcttc
ggtggttcaacagaaactgaagtgaagccggttgaagttgagaaaactgaaaccaacgaa
aaccgtcgtaatgatcgccgcaatcctcgccgccagaataatggccgcaaagaccgtggt
gaccgcacgccgcgcgaaggtcgtgataacagtagtcgcgacaacaatgcccgtgataat
agcactcgtgataacggcaaccgtgacaatgctaaccgcgataatagcaatcgcgaaggc
cgtgacgatcagcgccgcaataatagacgcccggcgcaacaagcaacggcaccacaggca
cagactgaagttgttgaagcagataaaacacagcgtgaagagcagccagcgcgtcgcggt
gatcgccaacgtcgtcgtccacaagatgataaacgccaggtatcacaagacgttaaagct
aaagttgatgcggatgtcgtcacagctgtagtcgaagaagcacaacctgagcaagaagaa
cgtcaacaggtgatgcagcgccgtcaacgtcgccaattgaatcagaaagtccgtattcaa
tccgcgaatgatgagctgaatgttctggaaagttctgttagcgagccagtttcccacatt
gctgcgccagtcgtgcaggaagaagtgaaattgctgccgcaagcaagctctcaggccgat
gatgaagcaacaaacgatcgtaatagcaacaatgaaaatggcatgccacgtcgctctcgc
cgctcacctcgccacctgcgtgtcagtggtcaacgccgtcgtcgctatcgtgatgagcgc
tacccaacccagtcagctatgccgctggcgggtgctttcgcctcaccagaaatggcatca
ggtaaagtgtgggtgcgttatccagtagctcaaccgtttgaacccgcctttgtggaaaat
ccggttgaagaacaacagccagttgagtacgtgcaggaagttactgctgtagtagaacaa
gtcgctgtagttgcagcacctgttgttgctgctgcgcctgttgctgctgccgtagctgaa
actgtcgtgccgactccagccccgcaacacaaaccaggtggttcttcatcatccgctgct
gccgtaccgggccgtgcgccggttgttgtagaaacggcaattgtagaaacggcaatcgtg
gaaacggcaatggtagaaacggtaactgtagcaccaatcgttgaaacccatgctgttgaa
gaacctacacaggtaactgaaattgcaccagcagcagaaactatcacggcagtcgagcca
gtgattgaagacgctgtggcaacagaaactgtagttgaagcgacaatcgaacccgtcgct
gtcatggaagaagccgtaacccaagagcctgttgttgaagaaacagcagctgtagttgat
gacgtgacagtcgctgaaaaagctgtagttgaagaggctgtagttgaagaagctatagtt
gaagatgtgacagttgaagaagcggtggttgaagcactaatcgtggcggaaacagtggtt
gaagattctgtggcagaagaagctacggtaactgaatcaccaaccgacacagctcctgtt
gccgttgcaccgcagcagccagttgttgctcatcccgaaggtgtgttattcaagcactat
gcttcagcgccaatgactaaagcaccggcacctgattaccaaccagcatcgccaagccaa
ggccattgggaacgtccagcctttgattttgcaggtaaaggttctgcgggtggtcatgcg
gcagcaactaaggcaacagcaccagcaacaaagccacaatcggttgaatag
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