Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE3309
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Entry
YE3309 CDS
T00469
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YE3309 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yen03400
]
YE3309 (recD)
Enzymes [BR:
yen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YE3309 (recD)
DNA repair and recombination proteins [BR:
yen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YE3309 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
PhoH
AAA_16
nSTAND3
CbiA
UvrD_C
T2SSE
AAA_28
DEAD
MukB
MeaB
FtsK_SpoIIIE
SRP54
NPHP3_N
Flavi_DEAD
TrwB_AAD_bind
AAA
AAA_14
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CAL13338
UniProt:
A1JPB7
LinkDB
All DBs
Position
complement(3610936..3612837)
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AA seq
633 aa
AA seq
DB search
MMTLLEQAVRDHLLRPLDVQFSRMIAGDNDPMLQLAAAVLSAEAGAGHVCLPLSYLQPDQ
LFGGRQPALSQALWQAVGAPDQLHWIQKLNSSPAVSDGSQPTPLVLQNDRLYLQRMWQYE
GDVVRFIASDNMASLINETSDGSETRDVNETLLRDTLDRLFGPAENEVDWQKVAAAVAAT
RRISVISGGPGTGKTTTVAKLLTALIQLSKGQRLRIQLAAPTGKAAARLTESLGNAIRQL
SLTDDERKLFPDQASTLHRLLGAQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMARLI
AALPTKAQVIFLGDRDQLASVEAGAVLGDICRFAELGYSAPRAKQLARLTGCTLVGNIPI
GEVETDTVNVRDSLCLLRKSYRFDEKSGIGQLALAVNAGRYRDALAVFNGTYSDIERFSL
ADSDDYQVLLEDCAAGYQHYLELAAAGADAVDVLAAFGRYQLLCALRAGPFGVSGLNERI
EQLLHRKRLIERTPGPSGRWYVGRPVMIGLNDSALGLFNGDIGIALLDPEGELRVHFQLP
DGNIKSVQPSRLPSHETAYAMTVHKSQGSEFEHTALVLPNTFMPVLTRELVYTAITRARQ
RLTLYCSDTVLSHAIRTPTLRVSGLVDRLNQLK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgttactggagcaagcggttcgtgaccacttactacggccactggatgttcag
ttctcgcggatgatagccggtgataatgatcccatgttgcaactggcagccgctgttctc
agtgctgaagctggtgctgggcacgtgtgtctaccattgagttatttgcagccagatcag
ctgtttggtggccgacagcccgcgctatcacaagcactgtggcaggctgtcggtgcacca
gatcaattacattggatacaaaaactcaatagctccccggcagtcagcgatggttcgcaa
cccacccccttagtgttgcaaaatgaccgtttgtatttacaacggatgtggcaatacgaa
ggtgatgtcgtgcgctttattgccagtgacaatatggcgtcgcttatcaacgaaaccagt
gatggcagcgaaaccagagatgtcaacgaaacattattaagagatacgcttgatcgccta
tttgggccggcagaaaatgaggtcgactggcaaaaagtcgccgcggcggtagcggctacc
cgccgtatttccgtgatttccggtggtccagggacggggaaaacaacgacggtagccaag
ttattgaccgcattgatacaactgagcaaagggcaacgtttacgtatccaacttgccgct
ccaaccggtaaagctgccgcacggttaactgaatcgctggggaacgccattcgccagctc
tcactaactgacgatgaacgcaagctattcccagatcaagcatccacattacaccgttta
ttgggtgcacaacctaacagccagcgcttacggtatcatcgtggtaacccgctaaacctt
gatgtgctggtggttgatgaagcatcaatggtggatttgcccatgatggcacggctcatt
gcagcattacccactaaagctcaggtgatttttctcggtgaccgtgaccaattggcttcg
gtagaggcgggagctgtactgggtgatatatgtcgctttgctgagttgggttacagcgcg
cctagagctaaacagttagctcgcttaacgggatgcacattggtgggaaacatcccgatt
ggtgaggtggagacagataccgtcaatgtccgtgatagtttgtgtttgctgcgcaaaagt
taccgcttcgatgaaaagtccggtatcgggcaacttgctttagcggttaatgccgggaga
tatcgtgatgcgttagccgtttttaacggtacatattcggatatcgagcgcttttctctg
gcagattccgatgattatcaggtattgctggaggattgtgctgctggttatcagcactat
cttgaactggcagccgcaggtgctgatgcggtggatgtacttgctgcatttggccgctat
caactgttatgcgcattacgcgccgggccatttggtgtcagtggcttaaacgagcgaatc
gaacaactattgcatcgcaagcgattaatagagcgaacaccagggccatcgggccgttgg
tatgttggcaggccggtgatgatagggcttaatgacagtgcactcggtttattcaacggc
gatattggtattgctttgcttgatcctgaaggtgagctgcgggtgcatttccaattacca
gacggcaatatcaaatcggtgcagccgagtcgtcttcccagccatgaaactgcttatgct
atgaccgtacataaatctcaaggatcggagtttgagcatactgcattggttctacccaat
acgttcatgccagtgttaactcgagaattggtctataccgcgattacccgcgcacgccag
cgtttgacactgtattgcagcgatacagtattaagtcatgcgatacgtacccctacgctt
cgcgtgagcggattggtagatcgtttgaatcaattgaagtga
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