Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0054
Help
Entry
YE105_C0054 CDS
T01480
Name
(GenBank) RNase II stability modulator
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
YE105_C0054
Enzymes [BR:
yep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
YE105_C0054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
RIP
Motif
Other DBs
NCBI-ProteinID:
ADZ40552
LinkDB
All DBs
Position
complement(66157..68151)
Genome browser
AA seq
664 aa
AA seq
DB search
MFQDQDTSILNTYFGTHSPFWRLAFDSQALELSAIKEIANIAIPLNSVQTMKIRGLTGIT
ASLDIEIEIYGHPLHLHLVGRKINDKEWGGTASAYADTESVARDLVMGLSFAEQVVSEAN
SVIVILDKDGCVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASSRKNIEGFFQRGA
SYEAERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILANTDM
ITGLPNRHAIHERINSAIQTRGDSSVGIIYLDLDNFKKVNDHYGHMFGDRLLKDVSLAIL
SCLGDNEMLARLGGDEFIVLVENATLNLLETTTQRILNRMKLPFRIGLIEVYTGCSIGIA
LCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKVSEYVWLDTNLRKAIEQHQ
LQIFYQPKISTKTGKVLGVEALVRWLSPERGLIAPQEFISYAEESGLIRPLGKWVLQTSM
QQAVDWKKRGINLRIAVNVSARQLIDEAIVTSFIESLEACELESSLVDVELTESCLIDNE
DAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHIDTNPISQSLV
RAIIVVAEALKMQVIAEGVETKEEEEFLDSIGVDEKQGFLYAKPMPADKLEHWLVTQHPH
LLLD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagaccaagacacgtcgatcctcaatacctactttggtactcatagcccattt
tggcggcttgcctttgatagccaggctttagagctgtcggcaattaaagagatagcaaat
attgcgatacctcttaattctgttcaaacaatgaaaatccggggcttaaccggtattacc
gccagtttagatattgaaattgaaatttatggtcacccccttcatttgcatcttgttggc
cgaaaaattaatgacaaagagtggggaggaacagcctcagcctatgccgatactgaatct
gtcgctcgtgatttggttatgggcctttcttttgcagaacaggttgtttctgaagctaac
tcagtgattgtgattctcgataaagatggctgcgtacagcgatttaaccaccttagcgag
gaatataccggtaagaaagagcaggatgttattggcaaaaatgtttacgacttatttatg
accgccaaggaaggagcctcatcacggaagaatattgaggggttttttcagcgtggtgca
tcttatgaagcggaacgttgggttaataccgtcaaagggaagcgtctcttcttattccgc
aataaatttgttcacagcggtagcggaaaaaacgaacgctatcttatctgctccggcact
gacattaccaaagaacgacgcgcccaagagcgccttaggattttggctaataccgatatg
attaccggtttgcctaaccgtcatgccattcatgagcgtattaacagcgcaatccaaacc
cgcggtgacagctcagtgggtattatttatctcgatctcgataacttcaaaaaagtaaat
gaccactatggtcatatgtttggtgatcgattactgaaagatgtctcgctggcaatttta
agttgcttgggtgacaacgaaatgcttgcccggttaggaggggatgagtttattgttctg
gtcgaaaacgccaccttgaatttgctggaaacaaccacacagcgaattctcaatcgcatg
aaattgccattccgaattggattgatcgaggtatataccggctgttcaattggcattgca
ctatgcccagagcatggtgatacgctggaaaatattatccgcagtgcggatacagccatg
tataccgcgaaggaacatgggaaacaaacctattccatcttctcgcaacaaatgaataaa
aaagtatccgagtatgtttggctcgataccaatttacgcaaagctatagaacaacatcaa
ttacaaatcttttaccaaccaaaaatatccaccaaaacgggaaaagtactcggtgtcgaa
gctctcgtcagatggctatcgcctgaacgaggtttaattgctcctcaggaatttatctca
tatgcggaagagtctgggcttatcaggcccttgggtaaatgggtactacaaacgtctatg
caacaggcagtggattggaaaaaacgtggaattaacctacgaattgcagtcaatgtttct
gcccgacaattaattgatgaagctatcgtcaccagttttattgagtctcttgaagcctgt
gagttggagtctagcttggtcgatgttgaattaactgaaagttgcttaattgataatgaa
gatgccgctatcaatataatgaagcagctacgccacttaggtgctcaagttcacttagat
gattttggtactggttattcttcactctcccagttagcgcgcattcctatagatgccatt
aaactggatcaaagttttgttcgccatattgacactaatcctatttcacaatctttggta
agagccattattgttgtcgccgaggcactaaaaatgcaagtcattgccgaaggagtggaa
acgaaagaggaagaggaattcctggattctatcggcgttgatgagaaacagggattcctt
tacgccaaaccaatgcccgcagataaactggagcattggctggtaacacaacaccctcac
cttttactggattag
DBGET
integrated database retrieval system
