Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0405
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Entry
YE105_C0405 CDS
T01480
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE105_C0405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yep03019
]
YE105_C0405
03016 Transfer RNA biogenesis [BR:
yep03016
]
YE105_C0405
Enzymes [BR:
yep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YE105_C0405
Messenger RNA biogenesis [BR:
yep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YE105_C0405
Transfer RNA biogenesis [BR:
yep03016
]
Prokaryotic type
tRNA degradation factors
YE105_C0405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
RNase_II_C_S1
HTH_20
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ADZ40903
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All DBs
Position
487631..490183
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AA seq
850 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDLYLSAEQMKTAIH
GDVVLAQPVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDGRLSFDILIPP
DAINGARMGYMVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLLELHTMYKALDQA
RAERGGIAFETEEAKFIFNAERRIERIESTVRNDAHKLIEECMILANIAAARFVEKHNEP
ALFRVHDRPSDDHISALRSVLSELGLTLGGGLKPEPKDYAVLMDEVADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNVKERWTPT
GGWHSEYEDMLQLGEHCSMTERRADEATRNVADWLKCDFMQDQVGKVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGQVYRLGDTVEIRVEAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKKADGQRTMRDTSTGRGGRGSSSSSSRRDSAPAGSGQ
KRPRRAKKPANFEPDSAFRPADAAAKLDDKALAEKKAKAKAKAKRASAKTKKIAAATKAK
RAKKKTSSDQ
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcttggagcgagaagcagaaaaatatgagtcaccaatccctagc
cgggagttcattttggctcatctcgcgaaacgcgaaacacctgccagccgtgaagaactg
gcaaatgaacttaatttatcgggtgaagaacagctagaggcgctgcgtcgccgcctgcgc
gcgatggagcgtgatgggcaattggtctttacccgtcgtcagtgctacgccttaccggag
cgcctggacttattgcgcgggactgttattggtcatcgtgatggctttggtttcttacgg
gttgaaggcagcaaagacgacctgtacctctcagccgagcaaatgaaaaccgcgattcat
ggcgatgtggtattggcccaacctgttggcgctgaccgcaaaggtcgtcgtgaagcgcgt
atcgtgcgcgtgttagtaccgaaaaccagccagattgtcgggcgctattttactgatgcg
ggtacgggttttgtggtgccggatgatggccgcttgagttttgatattctgatcccacct
gatgccatcaatggcgcgcggatggggtatatggtggtggtcgagttgacccagcgcccg
acccgccgtactaaagctgtgggtaagattgttgaagtactcggtgagaacatgggtacc
agcatggcggtggatatcgcgctgcgcactcatgaaatcccacatacctggccgccacaa
gttgaaaaacaagttgctgacctgaaagagcaagtgccggaagaagcgaaaaaagggcga
gtggatttacgcagtctgcccttagtgactattgatggtgaagatgcccgcgacttcgat
gatgctgtttactgcgagaaaaaacgcggtggcggctggcgcttgtgggtggcgattgct
gatgtcagttattatgtacgcccgcgcactgcactggatgatgaagctcgcagccgtggt
aactcggtttacttcccgtcacaagttgtcccgatgctgccggaagtgctgtcaaacggc
ctttgctccctgaatccgcaggtagaccgcctgtgtatggtatgtgagatgaccatctcc
gcacagggtaagctgtcgtcgtataagttctacgaagcggtgatgagctcgcacgcgcgt
ctgacctacaccaaagtatggcgaatcattgatggtgaagaatcactgcgcgagcaatat
aagccgctggtgccacatctgttagaactgcataccatgtacaaggcgctggatcaggct
cgtgctgagcgtggtggtattgcattcgaaaccgaagaggccaagtttatctttaacgct
gaacggcgtatcgagcgtattgagtcgacggtgcgtaatgacgcgcataagttgattgaa
gagtgcatgattctggcgaatatcgccgcagcgcggtttgtggaaaaacataacgaaccg
gcgctattccgggtgcatgatcgcccaagtgatgaccatatttcagcgctgcgtagtgtg
ctcagtgagctgggtctgacacttggtggtggtttgaaaccagagccaaaagattatgcg
gtgctgatggatgaagttgcggatcgtccggatcatgaaatgctgcaaaccatgttgctg
cgttcgatgaaacaggcgatttacgatccagaaaaccgtggtcactttggtttggcattg
gcgtcttatggtcactttacctcacccattcgccgttaccccgatttagccatgcaccgg
gctatcaagtaccagcttgccaaagagcacggcaatgtgaaagagcgctggacaccaacc
ggcggctggcacagtgagtacgaagatatgctgcaattgggtgaacattgctcaatgact
gaacgccgtgctgatgaagcgactcgtaatgttgcagattggctgaagtgtgattttatg
caggatcaggtggggaaagtcttcaccgggattattgccagcgtcaccggctttggtttc
ttcgtccgtctggatgatttgtttattgatggtttggtacatgtctccagtttggataat
gactactatcgttacgataacattggtcagcgtttgatcggtgaatcctcaggtcaggtt
taccggttgggtgataccgtggaaatccgggttgaggcggtacacatggatgagcgcaaa
attgattttgctctggtctccagtactcgtaaaccgcgtggtgaaggcaaaacggcgcgt
gataaagccaagaaagccgatggtcagcgcacgatgcgcgatacctccactggccgtggc
ggtcgtggtagttcatcgagttcatcacgtcgtgatagcgcgccagcaggaagtgggcag
aaacgccctcgtcgtgctaaaaaaccggcaaactttgagccagatagtgctttccgtccg
gcagatgccgccgctaagttagatgacaaagcgttggccgagaaaaaggccaaagcgaaa
gcgaaagcgaaaagagcatccgccaagaccaagaaaattgcagctgccaccaaggccaag
cgcgcgaagaaaaaaaccagcagtgaccaataa
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