Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0842
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Entry
YE105_C0842 CDS
T01480
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yep03019
]
YE105_C0842
Enzymes [BR:
yep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YE105_C0842
Messenger RNA biogenesis [BR:
yep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
YE105_C0842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
DUF2934
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADZ41338
LinkDB
All DBs
Position
993214..995733
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AA seq
839 aa
AA seq
DB search
MLQWLTMKVESMGKNVVSQRENNAQTGALPVGEVLSEILSALRTSPQVLLHAPTGAGKST
WLPLQILKYSGLPGRIIMLEPRRLAAKNVAYRLAQQLGEQPGQTVGYRMRAESKSGPNTR
LEVVTEGILTRMLQQDAELTGVSLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM
SATLDNQRLSTLLPSAPAIVSAGRSFPVERSYQPLSSHEQLEDGVANRVKRLLNEQSGSL
LLFLPGVGEIHRVMERLQGDVATDTDLCPLYGALPLTDQQKAIQPAPVGRRKVVLATNIA
ETSLTIEGIRLVVDSGLERVARFDVKNGLTRLMTQRISQASMVQRAGRAGRLEPGICWHL
FAKEQSDRAAEYSEPEILNSDLCSLWLELLNWGCQDAAQLSWLDQPPQTALDVARDLLRR
LGAIDSQGHLTGTGRSMANLGCEPRLAAMLCFAAGQSPDALATAALLAAILEEPPRSGEI
DLHDWLSRPQPHWQRRAKQLVQRINARVGVVDSDLAGQLLALAYPDRIAQQRGQDGRYLL
ANGMGAAMAQDEALSRAPWLVAASLLHSNSGPDARILLALPIEVEQLAKQLPHLIEEQTA
VEWDEDKGTLRTWRRWQIGRLTLRAQRLAKPSDEALQFALLNWVREQGLQILNWDENAEQ
LRTRIQCASRWLPEEQWPAVNDDNLLGKLELWLQPSLSGVRDLRGLRQVNIAEALTRLLS
WQLRQRLDTELPTHYTVPTGSRLPIRYYVDRPPILAVRLQEVFGEQRSPMLATGRVAVVL
ELLSPAHRPLQITGDLAAFWQGAYREVQKEMKGRYPKHVWPDDPANTRPTRRTKKYQDN
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttacaatggctgacgatgaaagtagagagcatggggaagaatgtggtgagtcagaga
gaaaataatgcgcagacgggcgctttaccggtaggtgaagtgctcagtgagattttgtct
gcgttgcgaacctcaccgcaagttttgctccacgctcccaccggagccggtaaatcgacg
tggctaccgttgcaaattctaaaatatagcggattgccaggccggattattatgttggaa
ccccgacggctggcggcgaaaaatgtggcttaccgtttggctcagcaattgggggaacag
ccgggccagactgtgggctatcggatgcgagccgaaagcaaaagcgggcccaatacccgt
cttgaggtggtaaccgaaggtattttgacccgcatgctccagcaagatgccgagttgacc
ggcgtgtctttggttatcctcgatgagtttcatgagcgtagtttgcaggctgatttggca
ctggcgctattgcttgatgtgcagcaagggctgcgtgatgatctcaaactgctgattatg
tccgcaacgctggataaccaacgcctttctacactgctgccatcagcccctgcgattgtt
tcagcggggcgtagctttcctgtcgagcgcagctatcagcctttgtctagccacgaacag
ctggaggatggggttgccaatcgcgttaaacgattattgaacgagcaatctggctctttg
ctgctatttttacccggtgttggcgaaattcatcgtgttatggaacggttgcaaggcgat
gtcgccacagacaccgacctttgcccattgtatggtgctttaccactcactgatcagcag
aaagccattcaaccggctcctgtggggcggcgaaaagtggtgctggcgaccaatattgct
gaaaccagcctgacgattgaaggtattaggctggtggtcgatagtgggttggagcgggtt
gcgcgctttgatgtcaaaaacggcctgacccgattaatgactcagcgtattagtcaggcc
tcaatggtacagcgcgctgggcgagccgggcgactggaaccgggtatctgttggcatctg
tttgctaaagaacagagcgatcgggcggcggaatatagcgaaccagaaattcttaacagt
gatttatgcagtttgtggctggaattgctgaattggggatgccaggacgcggcacagctc
agttggctggatcagcccccacaaacggcactggacgttgctcgagatttactgcgtcgt
ttgggggctatcgactcgcaggggcaccttactggtaccgggcgcagtatggcaaacttg
ggttgtgaaccacgactagccgccatgttgtgttttgccgccgggcaaagtccggatgcc
ttggccacggcggcactgttagccgcgattctggaagaaccaccccgttccggagaaatt
gatttacatgactggcttagccgcccacagccgcattggcagcggcgcgcaaagcaattg
gtacaaagaatcaatgctcgggtaggcgttgtggacagtgatctggctggtcagttgttg
gcgctggcttatccggatcgcatcgcgcaacaacgtgggcaagatggccgctatctgttg
gctaacggtatgggcgctgctatggcgcaagacgaggcgttatcacgtgcgccttggctg
gtggctgccagcttattgcacagcaacagcgggccggatgcgcgcattttattggcgctg
ccaattgaggttgaacagctggcgaaacagttaccccatttgattgaagagcaaaccgcg
gtcgaatgggatgaagataagggtacattacgcacctggcgacgctggcaaattgggcga
ttgaccctacgagcacaacgcttagcaaagccgagtgatgaagcattgcaattcgcgttg
ttaaactgggttcgtgagcaagggttgcagatcctgaattgggatgaaaatgccgaacag
ctacgcacccgtatacaatgcgccagccgctggctacccgaagagcaatggcccgcggta
aatgatgacaatttactgggcaaacttgaactgtggctacagccgtcgttgtccggcgtg
cgagatttacgcgggctgcggcaggtgaatatcgcggaagcactgactcgtttgttgagc
tggcagttacgtcaacggctggatactgagctgccaactcattacactgtgccgaccggt
agccgtctgccaatccgttattatgtcgatcggccaccgatactggcagtgcgtttgcag
gaagtttttggtgagcagcgcagcccgatgcttgccactgggcgggtagccgtagtgctt
gagttactttcacccgcgcatcgcccattacagattaccggcgatctggccgctttctgg
cagggagcgtatcgcgaggtacaaaaagagatgaaagggcgctatcccaaacatgtctgg
ccggatgatcccgcgaacacccggccaacacgcagaaccaagaagtatcaggataactga
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