Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0886
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Entry
YE105_C0886 CDS
T01480
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03410
Base excision repair
yep03430
Mismatch repair
yep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YE105_C0886
03430 Mismatch repair
YE105_C0886
03440 Homologous recombination
YE105_C0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yep03400
]
YE105_C0886
DNA repair and recombination proteins [BR:
yep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
YE105_C0886
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
YE105_C0886
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YE105_C0886
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADZ41382
LinkDB
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Position
1049505..1051238
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AA seq
577 aa
AA seq
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MTLKTQLRRREAVDDSHLPAQLHPLLRRLYASRGVKSAEELERGVKGLLAWQQLDGIGAS
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPE
VVEQVAARGAELIVTVDNGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLA
GCNFLSKSLAGVGVTFYLMLALRARLRDSGWFEQRTLAIPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAM
FHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGLLKGSGRSVTGLHMRDALERLDTLNP
GLMLKFGGHAMAAGLSLEQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGNELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTT
LWPDSSVREVKLAYKLDINEYRGNRSVQLLIQHLWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgacattgaaaactcaacttcgccgtcgtgaggcggtggatgatagccatttgcccgcc
cagttacacccattgctgcgccgcctttatgccagccgtggcgtaaaaagtgccgaggag
ctggagcgcggtgtaaaaggcctgcttgcctggcagcaactcgacggtattggagccagt
gttactctgttgcaacaagcattggctgacaggcgtcgtattgtgattgtcggtgatttt
gatgctgatggcgcaaccagcacggcgttggcagtgctcgctttgcgtagcatgggtggc
agtaatattgattatctggtgccaaatcgttttgaagatggctatgggctgagtcccgaa
gttgtcgagcaagttgctgcccgtggtgcagaactgatcgtcactgtcgataacggtatt
tcctctcatgcgggagtggatttggctcatgcactgggtatccaggtgttggttaccgac
catcacctgccgggtgaaaccttgccagcagcagaagctatcatcaatccaaatttggca
gggtgtaatttcctttccaaatccttggccggagtgggcgtcaccttttatctgatgctg
gcattacgtgcgcgtcttagagacagtggttggtttgaacagcgaactttagcgatacct
aacctggctgagttactggatttggtggcgctgggaacggttgccgatgtggtgccattg
gatgcaaataaccggattttggtgcatcaggggctaagccgtattcgtgccgggaaatgc
cggcctggtattcgtgcattactggaggttgccaatcgcgatgcgcgccaattggtagcc
aacgatctgggtttttcccttggcccacggcttaatgcagccgggcgtctggatgatatg
tccatcggggtggcgttgttgctcagtgacgatattgctcaggccagagcactggcaatt
gatcttgatgcgcttaatcaaacgcgccgtgagatagagcagggtatgcaggttgaagcc
ttgcaactgtgtgaccagttagagcgcaccagtactgaattaccttacggtatcgcgatg
tttcacccagagtggcaccaaggggtggtcgggattctggcctcacgcattaaagagcgt
tttcatcggccggttattgcttttgccccagcgggtgatggtttactgaaaggctcgggg
cgtagtgtgacaggcctgcatatgcgcgatgctcttgagcgcctggataccttaaaccca
gggttaatgctgaagtttggcggtcatgctatggcggcggggttatcgctggaacaggat
aaattcgatgaattccgtcagcgttttgcagatttagtcggtgaatggatggatgcctcg
cagttggagggggttatctggtcagacggtgaactgaatggcaacgaattatcactggaa
acagctgagttgttgcgcgatggcggcccgtgggggcaatcctttcctgaaccgacattt
gatggcaaattccgtatcttgcaacaacggctggtgggtgaacgccatctgaaacttatg
attgagcctttgaatggcgggcctttactggatggtatcgcgtttaatattgatacaact
ttatggccggatagcagcgtgcgcgaggttaaactggcttataaactcgatattaatgag
tatcgcggtaaccgcagtgtccagttgctgattcaacacctgtggccgtattag
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