Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0947
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Entry
YE105_C0947 CDS
T01480
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YE105_C0947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yep03400
]
YE105_C0947
Enzymes [BR:
yep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YE105_C0947
DNA repair and recombination proteins [BR:
yep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YE105_C0947
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ADZ41443
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All DBs
Position
1123667..1127113
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AA seq
1148 aa
AA seq
DB search
MVTFTEAATEELRGRIRDNIHELRIACVRGVSDDPMHQALLAEIIDLSEAATDLLAAERQ
MDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELPLRRQACADFWRRHCYPLPLAIA
RAVSQEWSGPEALLKDLSAYLQGETPKFRQAPGDDETILSRHQQIVVQIEAVKAQWRAAA
PELEALISGSGVDKRSYSARYLPNWLEKVGSWAEQETGDYQLPKELEKFRQSVLFEKTKK
GEAPQHDVFHTIDRIFEQPLTLRDLILARAISEIRISVQQEKRQRAELGFDDLLSKLDAA
LQQAGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTLYGGQEECGLLLIGDPKQAIYA
FRGADIFTYIRARSEVSAHYTLDTNWRSSFPMVQSVNRLFSLVDVPFLFKQIPFINVAPA
QKNKQLSFEIKGKKQPAMSFWLQSGDGVGVSEYQQLMARQCAAQIRDWLTAGQKGLAQLV
TATSSRPVQASDITILVRSRAEAALVRDALSTLAIPSVYLSNRDSVFDTAEAKDLLWLLQ
AVLAPEQERALRSAMATGILGLDARMLDELNHDERAWDALVDEFDGYRQHWQRRGVLPML
REIMAQRHLAENLLATQGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPNHQ
SDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVSNFRQQQDVLYHDRHSFEALLDLN
ADEESQALAEEERLAEDLRLLYVALTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYL
VQQGQAGDAQYLADKLAGLAALADGEISVSQAGQLDETPWQPQQDELPALAARQFSRQIH
DFWRVTSYSGLQQHGSSKSVASQALSVPLQELLPRLDTDAVGEQTLMTEPQLTPHTFPRG
AAPGTFLHDLLEPLDFSQPIEQDWLTEQLQQQGFGEQWSSMLYQWLTDIVQTPLNETGVT
LAQLTPQSKQAELQFYLPIDTLLQARELDTLIKRYDPLSRQCPVLDFQQVRGMLKGFIDL
VFCWQGKYYLLDYKSNWLGEDSSAYTHDAMAQAMAEHRYDLQYQLYTLALHRYLRHRLSH
YDYQRDFGGVIYLFLRGVDKQHPGNGIFSCRPERELIERMDCLFSGGEVGPHISDNSGMA
ITGEGTSI
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtggtgacctttactgaggcggcaactgaggagttgagagggcgaatccgcgacaatatt
catgagttgcgaattgcttgcgtaaggggagtcagtgatgacccaatgcatcaagcttta
ttagctgaaatcattgacttgagtgaggctgcaactgatttgctggcggctgaacgccag
atggatgaagcggcaatttatactattcacggtttttgtcagcgaatgctggctaacaat
gcttttgaatcgggcatcttattcgaacaaaccttggtgcaagatgagctaccattgcgc
aggcaagcttgcgccgatttctggcggcgtcattgctatccgctcccgttggctattgcc
agagcggttagccaggagtggagtgggccagaggcattacttaaagatctttctgcttac
ttacaaggtgaaacgccaaaatttcgacaagcgcctggtgatgatgaaacgatactcagt
cgacatcagcagatagtggtacaaattgaagccgttaaggcgcaatggcgcgccgctgct
ccagagttagaggcgctgattagtgggtctggtgttgataaacgcagctacagtgcccga
tatttacctaactggttggaaaaagttggtagctgggctgagcaggaaaccggcgattat
cagttgccaaaagagttagagaaattccgccaatcagtactatttgaaaaaaccaaaaag
ggtgaggctccccagcacgatgtcttccatactatagaccgtatattcgaacaacctctg
acactcagagatctgattttagcccgagctatcagcgagatacgaatctctgtgcagcaa
gaaaaacgccagagggcagagctggggtttgatgatctgctcagtaaactggatgcggca
ttgcaacaagctggtggagaattgttggctcaatccattcgcactcgttatcccgtagca
atgattgatgagtttcaagataccgacccgcaacaataccgaattttccacacactttat
ggtgggcaagaagagtgcggcctattactgattggtgaccctaaacaggctatttatgct
tttcgtggtgccgatatttttacttatattcgtgctcgctcagaagtaagtgcccactac
acattagatactaactggcgctcatccttcccaatggtgcaatcagttaaccggcttttt
agtctagtcgatgttccttttttgtttaaacaaattccctttataaatgtggcgcctgcg
caaaaaaataagcaattatcatttgaaataaaagggaaaaaacagccagctatgtctttt
tggttgcagtctggggacggtgttggggttagtgagtaccaacaattaatggcacggcaa
tgtgccgcccaaatccgagactggcttactgctgggcaaaaaggtttggcacaattagtg
acagccacaagttcaaggccggttcaggcgtcagatatcaccatattggtgcgtagccgg
gcagaggcggcactggtgcgcgatgccctgagtacattggcaatcccatccgtgtatctc
tccaaccgtgacagcgtatttgatactgcggaggccaaagatctgctgtggctattacag
gctgttttagctcccgagcaggagcgggcattacgcagcgctatggcgaccggcatcttg
gggctggatgcgcgaatgctggatgagttgaatcacgatgagcgggcttgggatgctttg
gttgatgagttcgatggttatcgccaacactggcagcgccgtggggtgctcccgatgctg
cgggagattatggctcagcgccatttagctgagaatttgttggcaactcagggcggtgaa
cggcggctaacagatttgctgcatttgggcgaattattgcaagaagcagcatcacagctt
gatagtgagcacgcacttatccgttggctggcgcaacaaatagcacaaccgaatcatcag
tctgataaccaacaacttcgtttggaaagtgatcgccatttggtgcaagtcattactatc
cataaatccaaaggattggaatacccgctggtttggttaccttttgtgagcaatttccgc
cagcagcaagacgtgctttaccatgatcgccacagctttgaagcattactcgatctgaat
gctgatgaagaaagtcaggctttggcggaggaagaacgtctggctgaggacttacggcta
ttatacgtagcactcacccgtgcggtttatcattgcagcataggtattgccccgctgatt
aaaggggggcgaaaaaaacagggtgaaagtgatatgcatctcagcgcgttaggctatctg
gtgcaacaaggtcaggcgggagatgcacaatatcttgctgataaattggcaggtttggcg
gcgctggcagatggagagatttctgtttcacaagccgggcaactggatgagacaccttgg
caaccgcagcaggatgagttgccagcccttgctgctcgccagtttagtcgccaaatacac
gatttttggcgggtcaccagctattccggcctacaacagcatggttcgagtaaaagcgta
gcctcacaggcgttgagtgtgccattacaggagttattaccacggttggatactgacgct
gttggcgagcaaacattaatgaccgagcctcagttaacccctcataccttcccccgaggt
gcggcacccggtactttcttgcatgatttacttgaacctctggatttcagccagccgatt
gaacaagactggctgacagagcagctacagcaacaaggttttggtgagcagtggtcatct
atgctgtatcaatggctaacagacattgtacaaacccctctaaatgaaactggtgtgaca
ttggcgcaattgacaccacagagcaagcaagctgagctgcaattttatttgccgatagac
actttactgcaagcccgtgagctagataccttaatcaagcgctatgacccactctctcgc
cagtgcccagtgttggattttcagcaagtcagaggaatgctgaaagggtttattgatctg
gttttctgctggcagggcaaatattacttactggattacaaatccaactggttgggtgag
gacagcagtgcctatacccacgatgcgatggcccaagccatggctgagcatcgttatgac
ttgcaatatcagctttatactctggcattacaccgctatttgcgtcatcggttgagtcat
tatgactatcagcgcgactttggtggtgtcatttatctcttcctgcgtggtgttgataaa
cagcatccggggaacggcatttttagctgccgccctgaacgagaactcattgagagaatg
gactgtttattcagtggtggtgaagtagggccgcatattagtgacaacagtggtatggcg
ataaccggtgagggcacatcaatatga
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