Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0985
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Entry
YE105_C0985 CDS
T01480
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03030
DNA replication
yep03430
Mismatch repair
yep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YE105_C0985
03430 Mismatch repair
YE105_C0985
03440 Homologous recombination
YE105_C0985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yep03032
]
YE105_C0985
03400 DNA repair and recombination proteins [BR:
yep03400
]
YE105_C0985
Enzymes [BR:
yep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YE105_C0985
DNA replication proteins [BR:
yep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YE105_C0985
DNA repair and recombination proteins [BR:
yep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YE105_C0985
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADZ41481
LinkDB
All DBs
Position
1170614..1174129
Genome browser
AA seq
1171 aa
AA seq
DB search
MIQSTNFWCLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHSAGVKPIIGADFYVQSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDMSTE
DFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGM
TLEKAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASI
PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEG
EIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFD
RLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIV
LDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgattcaatccactaatttctggtgtctggatatggccgaacctcgttttgtccacctg
cgtgttcacagcgattactccatgatagatggattagccaagattggacccttggtgaag
agagctgctgcattaggcatgcccgctctggccattaccgattttaccaacctatgcggc
ttggtaaaattctacggtagcgcgcatagtgctggggtcaaacccatcatcggcgcagac
ttctatgtgcaaagtgaaatcttaggtgatgaattagctcacctgactgtgctggcacgc
aataataaaggttaccaaaatcttactttactgatatctgaagcttatcaacgcggctat
ggcgcagctggccctattattgaccgtgactggctgattaagcataaagaaggtctgatt
ctgctgtccggtggtcggatgggggatgtgggtaagtttattctgcggggtaatcatgct
caggttgagcagtgccttgagttttatcaagagcatttccctgacagttactatctggaa
ttaatccgtactggtcgcccggatgaagaaaactaccttcatgccgctgtggcattagca
acagaacgtggcttgcccgtggtagcgaccaatgatgtgcgttttatcgatgaatcagat
tttgatgcccacgagattcgcgtggctatccacgacggttttactctggttgatcctaag
cgacctaaaaactatagcccgcagcagtttatgcgcgacgaagagcagatgtgtgagctg
ttcgcggatattcctgaggcgctaatcaacagtgttgaaatcgctaaacgttgtaatgtg
acgatccggcttggggagtattttttaccccagttcccaacgggtgatatgagcacagaa
gacttcctggttgaaaagtctaaacaaggtttagaagaacgactggagttcttgttccct
gatcctgaagttcgggcacaaaaacgccctgcatatgatgaacgtctggaaatcgaacta
aaagttattaaccagatgggcttccccggctacttcttgatagtaatggaatttatccag
tggtcaaaagataacggggtgccggtagggccaggccgtggttctggtgccggttccctg
gttgcttacgcgctgaagattaccgaccttgatccactggaatttgacctactgttcgaa
cgtttcttaaacccagaacgtgtatcaatgcctgacttcgacgtcgacttctgcatggag
aagcgcgatctggtgattgagcacgttgcggatatgtatggtcgggatgctgtttctcag
ataattacctttggtactatggcagccaaagcggtgatccgcgatgtgggccgtgtactg
ggtcatccttatggttttgtcgatcgtatctccaaactggtcccgcctgacccgggtatg
acgttggagaaagctttcgcagcggaaccgcaactgcctgaaatctatgaggcagatgaa
gaagttagagcgctgattgatatggcgcgaaaattggaaggggtaacgcgtaacgccggt
aagcatgccggtggggtggttatcgcaccaacaaaaattactgatttcgccccgctatac
tgtgatgcggaagggaataacccggttacacagttcgataagaatgatgtggaatatgcc
ggattggtgaagtttgacttccttggtttgcgaacgctcactatcattaactgggcgttg
gagatgatcaacgcccgccgcgcgaaaactggattagagccgattgatattgcatctatt
ccgctggatgataaaaaaagcttcgatatgctgcaacgttctgaaacgacagcagtattc
cagctagaatccagaggcatgaaagatcttatcaagcgtctaaaacctgactgcttcgaa
gatatgatcgcattggtggcgctattccgccctggcccgttgcaatcagggatggttgat
aactttattgaccgtaaacacggccgtgaagcgatatcctatcctgatattgaatggcaa
catgaatctctaaaaccggtgcttgagccgacctacggcattattttgtaccaagaacag
gttatgcagattgcgcaggttctgtctggttactcactcggcggcgcggatatgttgcgg
cgtgcgatgggtaagaaaaacccggcagaaatggcgaaacagcgctctatatttgaagat
ggtgccaaaaatcagggcgttgacggcgagctggcaattaaaatctttgacctggtagag
aaatttgctggctatggttttaacaaatcacactctgccgcttatgctttggtttcttac
caaactttatggttgaaagcccattatccggctgaatttatggcggcggtaatgacggca
gatatggacaacactgataaagtggtaggtctggtcgatgagtgctggcggatggggctg
aaaattctgcctccggatatcaacagtggcctatatcatttccatgtaaatgatgagggc
gaaattgtttatggtatcggtgcaatcaaaggtgttggcgaggggcctatcgaggccatg
ttggaagcccgtaaagaggggggctatttcaaagagttatttgatttatgtgccagagtt
gacacaaaaaaactcaatcgtcgaattttagaaaagcttattatgtctggtgcctttgac
cgtttggggccacaccgggctgcattaatgagctcgctgggtgaggcgttaaaggcagca
gaccaacatgccaaggcagaagctattggtcaggttgatatgtttggtgtattggcagat
gcaccagagcaggttgagcaatcttatgctaatgtgccgccgtggcaagagcagattgtt
ttagacggtgagcgggaaacgctggggttatacctgactggccacccgatcacccagtat
ctgaaggaaatagaacgttatgccggcgggctgcgtttgaaagatatgcatccgacggat
cggggcaaaatgaccatggctgcggggctggttatcgcagccagaattatggtgacaaaa
cgcggaaatcgtattggtatttgtactttggatgaccgttccgggcgtcttgaggtgatg
ttattcaccgatgcgttggaaaaatatcagcatttgttagaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtggacttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcccgtgggcttgctatatcgctgacc
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtgcatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattgatagatttgcgaacgctg
gtaggtaatgagcaggtggaactggaatttgactaa
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