Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C1390
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Entry
YE105_C1390 CDS
T01480
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE105_C1390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yep03019
]
YE105_C1390
Enzymes [BR:
yep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YE105_C1390
Messenger RNA biogenesis [BR:
yep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YE105_C1390
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADZ41886
LinkDB
All DBs
Position
1643967..1645322
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AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGAAAGRG
DSRTSRPRSQADGQRRPAGPSSRGRSRKPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggtttaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacgccaattcaacgtcaggcaatccctgtggtactggaaggccgtgat
ttaatggccagcgcacaaaccggtaccggtaaaaccgctggtttcaccttgccattgttg
caattgctgagtcaggaccaacagcctattaaaggccgtcgcccggtgcgcgcgttgatt
ttgacgccgactcgcgaactggctgcgcagattgacgaaaacgtccagagttacagcaaa
tacctgaagctgcgttcgctggtggtatttggtggcgttagtattaacccacagatgatg
aaattgcgtggtggtgttgatattttggtcgccaccccgggccgtttgctggatctggaa
catcagaacgctgttgatttgtccaaaattgaaattttggtattggacgaagccgaccgt
atgctggatatgggctttattcacgatatccgccgtgttttggcaaaactgccagccaag
cgtcagaacttgctgttctccgccaccttctctgatgagattaaaggtttggctagcaag
ctgttgcataaccccgcttctgttgaagtggcgcgtcgcaacactgcttctgaacaaatt
gcacaaagcgttcattttgtggacaaaaaccgcaagcgcgagctgttgtctcagatgatt
ggcgaaggtaactggcagcaagtattggtgttcaatcgcaccaaacatggcgctaaccat
ttggctgaacaattgaataaagacggcattactgccgccgctattcacggtaacaagagt
cagggcgcgcgtactcgtgcattggctgattttaaagatggcaaaatccgtgtactggtc
gcgactgatatcgccgctcgcggtttggatattgatcagttacctcatgtagttaactat
gaactgccaaacgtaccggaagattacgtgcaccgcattggtcggactggccgcgcggaa
cgtactggtgaagcgatttctttagtttgtgttgatgaacataaactgttgcgtgatatc
gagcgcttactgaaacgtgaaatcccacgcattgcgctggatggctatgagccggacccg
agcattaaagcagatccgattcaaaatggccgtcaaggtcgcggagcacaacgtcctggt
atggggcgtggtagcagtgccggccgcccacaaaatggtggcgcagcagcaggccgtggc
gatagccgcaccagccgcccacgtagccaggctgatggtcaacgccgcccggcaggcccg
tcttcacgtggccgtagtcgtaaaccaggcgaataa
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