Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C2461
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Entry
YE105_C2461 CDS
T01480
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YE105_C2461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yep03400
]
YE105_C2461
Enzymes [BR:
yep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YE105_C2461
DNA repair and recombination proteins [BR:
yep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YE105_C2461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADZ42957
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All DBs
Position
2823857..2827303
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQQHRYSLPTRRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQ
QFSPHPVNTLSDWETLPYDSFSPHQDIISARLSCLYHLPTMERGVIILPINTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDDIDSLRVFDVDSQRTLSEVDQINLLPAHEFPIDKNAIELFRSQWREQFEVRRD
AEHIYQQVSKGIWPAGIEYWQPLFFNQPLPTLFSYLPENTLLINTGSLESSAERFWQDVN
QRYESRRVDPMRPLLAPETLWLRVDSLFSELKEWPRVQFKTEKLPTKTANTNLHYQPLPD
LSVQAQQKAPLDNLRRFIESFSDSVVFSVESEGRRETLQDLLARIKISPTLISELSQATA
PGHYLMIGASERGFLDTDKQLALICESDLLGERVNRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRW
QDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKATQKLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPEDFIPDV
NVRLSFYKRIASARDETELDELKVELIDRFGKLPDAARYLLHTAELRQQAQKLGIKRIEG
NERGGFIEFGEKNKVDPVYLIGLLQRQPQIFRLEGPTKLKFMQDLSDRAKRLKFISELLA
AFAQHRVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaacatcgttattcattgccaacgcgccgtggcgacacccgccagttaggc
cagttgactggttccgcttgcgccgtcgagtgtgcagaaatcattgagcgccatgatggc
ccggtaatgttaattaccccggatatgcaaacggcgctgcgactgcgtgatgaaattcag
cagttttccccccatccggtaaataccctctccgactgggaaacgctgccttacgacagt
ttctcaccccatcaggatattatttcggcccgcctttcttgtctgtaccaccttccgaca
atggaacgcggtgttattattctcccgattaatactctgatgcaacgggtttgcccgcac
gaattcctgcacggtcatgctctggtgatgaaaaaaggccagcacctgtcgcgagataaa
ttacgcgctcagcttgagcaagcgggatatcgcagtgtcgatcaggtcatggagcacggt
gagtttgctacccgcggggccttgcttgatctgtatccgatgggcagtgaagagccttat
cgcattgacttttttgatgatgacattgatagcttgcgcgtatttgatgtggattcacag
cgcaccctgtccgaagttgatcaaataaacttactccccgcccatgaattcccgatagat
aaaaacgccattgaattattccgcagccaatggcgtgaacagttcgaagtgcgccgcgat
gcggaacatatttaccagcaagtgagcaaaggcatctggcctgccgggatcgaatactgg
caaccgctattcttcaaccagccattgccgacactgtttagctacttgcctgaaaatacc
ttattgattaacaccggctcgctggaaagctcagcggagcgtttctggcaagatgttaac
caacgctatgaaagccgtcgtgttgacccaatgcgcccattgctggccccggaaacatta
tggctacgggttgattcactttttagtgagttaaaagagtggccgcgggttcagttcaag
accgaaaaattaccgactaaaaccgccaataccaacttacactatcagccgctgcccgat
ttatccgtacaggcacagcaaaaagcgccactggataatctgcggcgctttattgagtca
tttagcgatagtgtcgtgttttcggtggaaagtgaggggcgacgcgaaaccctgcaagat
ctgctggcacggataaaaatcagtccaaccctgataagcgagctatctcaagccacggca
cccggccattatctgatgattggtgcctcagaacgtggtttccttgataccgataaacaa
ttagcgctgatttgcgaaagtgacttactgggcgagcgcgtgaaccgccgccgccaggat
aatcgccgcaccattaataccgataccttaatccgcaatctggcggaattgcgccccggc
cagccagtggttcatctggagcacggtgtgggccgctatcttggtcttaccacattagaa
gctggcggtattaaagctgaatacctgatattgacctatgccggtgaagataagctgtac
gtgccggtttcatcactgcatcttatcagtcgctattccggcggtgctgacgaaaatgca
ccgctgcataaactgggtggcgatgcctggagccgtgcgcggcagaaagccgccgagaaa
gtgcgtgatgtggcggctgaactgctggacatctatgcgcagcgcgccgccaaatctggc
tttaaattcaagttcgaccgcgaacagtatcagttgttctgccaaagcttcccgttcgaa
accactccagatcaggaacaggccatcaatgcggtactcagcgatatgtgccgaccgctg
gctatggaccgactggtatgtggtgatgttggtttcggtaaaaccgaagtggcgatgcgg
gcagccttcctggcggtggcgaataataagcaagttgccgtcttggtgccgaccaccctg
ctcgctcaacagcatttcgacaacttccgcgaccgcttcgccacctggccggtgcgaatt
gaaatgatgtcacgcttccgcagtgccaaagagcagcaagtgattttggagcaagctgct
gaaggcaaagtcgatattattatcggcacccataaattgctgcaaagtgacctgcgctgg
caagacctcggtctgttgattgtcgatgaggaacatcgcttcggtgtgcgtcataaagag
cgcatcaaagctatgcgcgccgatgtcgatattctgacacttaccgccacgcctatcccg
cgcacactgaatatggcgatgagcggtatgcgggacttatcgattattgcgacgccacct
gcgcgccgtctggcggtgaaaaccttcgtgcgtgagtacgatagcttagtggtacgagaa
gcgattctgcgcgaaatcctgcggggcgggcaagtttattatctctataacgatgtggaa
aatatcgaaaaagccactcagaaactggctgagttagtgccagaagcacgcattgctatt
ggtcacgggcaaatgcgtgagcgggatctggagcgggtgatgaatgatttccatcatcag
cgctttaacgttttggtctgcaccaccattatcgaaacggggattgatattccgagcgcc
aataccattatcatcgaacgcgccgatcattttggtctggcgcagttgcaccagttgcgc
ggccgggttgggcgctcccaccatcaggcctatgcttacttgcttacgccaaatccgaaa
gcgatgaccaccgatgccaaaaaacgtctggaagctatcgcgtcgctagaagatctcggt
gctggctttgctctggcaactcatgaccttgagattcgtggtgccggtgagctattaggc
gaggaccaaagtggccagatgaccaccatcggtttctcgctatatatggagttactggaa
agcgcggttgatgcgctgaaggaaggtagagagccatcactggaagacttgaccagcaat
cagaccgaaattgaaatgcgtatgccggttttgctgccggaggactttattccagatgtg
aatgtccggctttcgttctataagcgcattgccagtgcacgcgatgaaactgaacttgat
gaattgaaagtcgaacttattgatcgctttggtaaactgccggatgcagcccgttatctg
ttacataccgcagaattgcgccaacaggctcagaagctgggaatcaaacgtattgaaggt
aatgagcgcggaggctttatcgaattcggtgagaagaacaaagtcgatccggtttatctg
attggtttgctgcaacgccagccgcaaatattccgactggaagggccaaccaaactgaaa
tttatgcaggatcttagcgaccgagcgaagcgattgaagtttatcagtgaattgctggct
gcatttgctcagcatcgcgtagcttaa
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