Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C3081
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Entry
YE105_C3081 CDS
T01480
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yep03009
]
YE105_C3081
Enzymes [BR:
yep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YE105_C3081
Ribosome biogenesis [BR:
yep03009
]
Prokaryotic type
rRNA helicases
YE105_C3081
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADZ43575
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Position
3581256..3582581
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AA seq
441 aa
AA seq
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MTVTNFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RKQTLLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADNIEHKTALLV
HLLKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVN
VLVATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLL
GRIGRYLKEPLKPRVIDELRPTSKAPSEKSTGKPSKKVLAKRKELKEAGKEKTKVKVRHR
DAKNVGKRRKPKDKPDTKSVS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgaactcgatctcgatgaacgcctgattgacgcattgcgc
gacaaaggctatgagcgcccgactgccattcaagctgcggctattccgccagctatggat
gggcgcgatgtattgggttcggcaccaacaggtaccggcaaaactgccgcctttttgctg
cccgccttgcagcatttgctggatttcccacgcaaaaaatctggcccaccacggattttg
atcctgacgccaactcgtgagttagccatgcaagtggcagatcaagcccgtgagcttgcc
aagcatacccaactggatatcgcgaccatcaccggtggtgtcgcttatatgaaccacgcg
gaagtctttagtgagaatcaggatattgtagtggcgacaaccggccgcttgctgcaatac
atcaaagaagaaaactttgactgtcgggcagtagaaaccctgattctggacgaagctgac
cgtatgcttgatatgggcttcgcacaggatattgaaactatctcggcagaaacccgctgg
cgtaaacagaccttacttttctcagccacgctagaaggtgaagctattcgtgagtttgcg
gagcgcatcctgactgagccggtagagctggaagctgacccatcacgccgtgaacgtaaa
aaaattcagcaatggtattaccgcgcagacaatattgagcacaaaactgccttgctcgtg
catttgctgaagcaaccagaagtacagaaatccattatttttgtgcgtacccgtgaaaag
gtacatcaactggtcagttggttacgcgaagctggaattaatgcctggttccttgagggt
gaaatggttcaggccaaacgtaccgaagccgtgattcgtttaagcgatggtcgggttaac
gttctggttgcaacggatgtggcttcacgcggtctggatatcgacgatatcagccatgtg
ttcaactttgatttgccgctgactgctgacgtctaccttcaccgtatcggccgtactggc
cgtgcagggcgtaaaggggttgctatttccctggttgaagcgcatgaccatttattgctg
ggtagaataggccgttatctgaaagagccattgaagccacgagtgattgatgagctgcga
ccaaccagtaaagcaccgagcgagaaaagcacaggtaaaccgtctaaaaaggttttagcg
aagcgtaaggagctaaaagaagccggtaaagagaaaacgaaagttaaggttcgccatcgc
gatgctaagaatgtgggtaagcgccgtaagccaaaggacaagcccgataccaagagtgtg
agttaa
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