Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C3381
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Entry
YE105_C3381 CDS
T01480
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YE105_C3381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yep03021
]
YE105_C3381
Transcription machinery [BR:
yep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YE105_C3381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ADZ43875
LinkDB
All DBs
Position
3894878..3896716
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDDDDEDEDDEEEEDDNSIDPELARQKFSELREQYENARLEIKKNGRS
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFASNETSDTWFAAAIAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcccct
gatgccgatgatttaatgctggccgagaacaccactgataccgacgatgacgcggctgaa
gctgctgcacaggtgttgtccagtgttgaatccgaaatcgggcgtacaaccgacccggtg
cgtatgtacatgcgtgaaatgggtaccgttgagctattgacgcgtgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggtccagtgctcagtggctgaataccct
gaagcgattacttacctattggagcaatatgatcgcgttgaggcgggcgaagctcgtcta
tctgacctgatcaccggctttgttgacccaaacgccgaagaagatattgcgccgactgca
actcacgttggttctgaattatccactgaagaaatggatgatgacgacgacgaagatgaa
gacgacgaagaagaagaagacgataacagcatcgatccagagctggcacgccagaaattc
agtgaattgcgtgagcagtacgaaaacgcacgtttggaaatcaagaagaatggtcgtagc
cacgccaacgctgctgctgagattctgaaactttctgaagtgttcaaacagttccgcctg
gtaccgaagcagttcgactatctggtcaacaacatgcgtgccatgatggaccgcgttcgt
acccaagaacgtatcatcatgaaactgtgtgttgaacagtgcaaaatgccgaagaaaaac
ttcgttaccctgtttgccagcaatgaaaccagcgatacctggtttgcagctgcaattgct
atgggtaaaccatggtctgaaaaactgaaagatgtttcggacgatgtgcaacgtagcttg
caaaaactacgtcagatcgaagaagaaaccggcctgaccattgagcaagtgaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgcgccaagaaagaaatggttgag
gctaacctgcgtctggttatctctattgcgaaaaaatacaccaaccgtggcttgcagttc
cttgatttaattcaggaaggcaatatcggtttgatgaaagcagtagataaattcgaatac
cgccgtggttataagttctcaacctatgcaacctggtggattcgtcaggctatcacccgc
tctatcgcggaccaggcacgtactatccgtattccggtgcatatgattgagactattaac
aaactcaaccgtatttcgcgccagatgctgcaagagatgggccgcgagccaacgccggaa
gagttggctgaacgcatgctgatgccggaagacaaaatccgtaaagtattgaagattgcg
aaagagccaatctcaatggaaaccccaatcggtgatgatgaagattcacatctgggcgat
ttcattgaagataccactctggagctgccgctggactctgccacctctgagagcctgcgt
tctgccactcacgacgtgttagctggcctgaccgcgcgtgaagcgaaagttctacgtatg
cgtttcggtatcgatatgaacactgaccacactctggaagaagtgggcaaacagttcgac
gtcacccgtgaacgtatccgtcagatcgaagctaaggcactgcgtaaactgcgtcaccca
agccgctctgaagtgctgcgcagcttccttgacgattaa
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