Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C3467
Help
Entry
YE105_C3467 CDS
T01480
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep02020
Two-component system
yep02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YE105_C3467
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YE105_C3467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yep03021
]
YE105_C3467
Transcription machinery [BR:
yep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YE105_C3467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ADZ43961
LinkDB
All DBs
Position
3991459..3992892
Genome browser
AA seq
477 aa
AA seq
DB search
MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDAKE
TIDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGMGNDYSDDELPVYQGETTQTL
QDYLMWQVDLTPFSETDAAIATSIVDAVDETGYLTVPLEDILESMGDENVALDEVEAVLK
RIQHFDPIGVAARNLRECLLVQLSQYDKDTPYLAEARLVISEYLDLLGNHDFRTMIRLSR
LKEDTLKEAIALIQSLDPRPGQSINTGESEYVIPDVLVRKDKGHWTVELNADSIPRLKIN
QQYAAMGSNTRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQQVAFFENGPE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLVAAENPAKPLSDSKLTTLLCEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaagttcagccaacaactggcaatgactccgcagctacag
caggctattcgcctgttgcagctttctacgctagaactccagcaggagattcagttagcg
ctggagagcaaccccctgcttgagcaaactgatcttcatgaagagatagatgcaaaagaa
acaatagacagtgaatcgcttgatacccgcgaagcactggaacagaaagatatgccggaa
gagttgccactggatgctacctgggatgagatttacaccgcaggcacaccgtcgggtatg
ggcaatgattacagcgacgatgaactgccggtctatcagggtgaaaccactcaaacgctg
caagactatttgatgtggcaagtagacttgaccccgttctcagaaactgatgccgccatt
gcaacatcgatcgtcgatgcggttgatgaaaccggttatctcactgtgccactggaagac
attctggaaagcatgggggatgaaaacgtcgcattggacgaagttgaagctgtgctcaag
cggatacaacactttgatcctattggtgtagccgcgcgtaacctgcgcgagtgcctattg
gtacagctatcgcaatatgacaaagacaccccctatctcgctgaagcacgcctggtcatt
agcgaatatctggatttgctaggcaaccatgatttccgtacgatgattcgtttaagtcgg
ctaaaagaagatacacttaaagaggccattgccctgattcagtcactggatccgcgccct
ggtcagtctatcaataccggggaatctgagtatgtgattccagatgttctggtacgtaaa
gacaaagggcactggacggtcgagcttaatgccgatagcattccacgcctaaaaatcaac
cagcagtacgcagcgatgggcagcaatacccgtaatgacagtgacgggcagttcattcgt
agcaatttgcaagaagcaaaatggttgataaaaagccttgagagccgtaatgaaacgcta
ttgaaagtggcgcgttgcattgtagagcagcaggtggctttttttgaaaatgggcctgaa
tttatgaaacccatggtgctggcagacattgcccaagccgtggatatgcatgagtcgaca
atttcccgtgtgaccacgcagaagttcctgcacagtcctcgaggcattttcgaactgaaa
tatttcttctccagtcacgtcaatacagatagcggaggcgaagcttcttctactgcgatt
cgtgcactggtgaaaaaattggttgcggcagaaaatcctgccaaaccacttagtgacagt
aaactgaccacactattatgtgaacaaggcattatggtggctcggcgaaccgtcgcgaag
tatcgagagtcgttatccatcccgccgtcaaaccagcgtaaacagttggtttga
DBGET
integrated database retrieval system
