Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C3616
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Entry
YE105_C3616 CDS
T01480
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YE105_C3616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yep03021
]
YE105_C3616
03400 DNA repair and recombination proteins [BR:
yep03400
]
YE105_C3616
Enzymes [BR:
yep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YE105_C3616
Transcription machinery [BR:
yep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YE105_C3616
DNA repair and recombination proteins [BR:
yep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YE105_C3616
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ADZ44110
LinkDB
All DBs
Position
complement(4173031..4174023)
Genome browser
AA seq
330 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADNE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccgttagagcgtggctttggccatactctcggc
aacgcactgcgccgtattctgctttcatctatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggcgtacaggaagatatcctggag
atcctgctcaacctgaaagggctggcggtgagagttcagggtaaagatgaagttattctt
accctgaataagtctggcattggccctgtgactgcagccgatatcacccatgatggtgat
gtcgaaatcgtcaagccgcagcacgttatctgccacctgaccgatgagaacgcatctatt
agtatgcgtatcaaagttcaacgtggtcggggttatgtgccggcttctgcccgaattcat
tcggaagaagatgagcgcccgattggtcgtttgttagtagacgcatgctatagccctgta
gagcgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag
ttggttatcgagatggaaaccaatggcacgatcgatcctgaagaggcgatccgccgtgcg
gcaactatcttggctgaacagcttgaagctttcgttgacctacgtgatgtacgtcagccg
gaagttaaagaagagaagccagagtttgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgcctcaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgagttgctgaaaacgcctaacctgggtaaaaaatctctc
actgagattaaagacgtgctcgcatcacgtggtctttctttaggcatgcgcctggaaaat
tggccaccggctagcattgctgataacgagtaa
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