Yersinia enterocolitica 2516-87: CH48_12
Help
Entry
CH48_12 CDS
T03644
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yet
Yersinia enterocolitica 2516-87
Pathway
yet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH48_12
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yet03019
]
CH48_12
03009 Ribosome biogenesis [BR:
yet03009
]
CH48_12
Enzymes [BR:
yet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CH48_12
Messenger RNA biogenesis [BR:
yet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH48_12
Ribosome biogenesis [BR:
yet03009
]
Prokaryotic type
rRNA processing factors
CH48_12
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJJ26583
LinkDB
All DBs
Position
10182..13664
Genome browser
AA seq
1160 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPP
ESAPAAANVKPTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNE
NRRNDRRNPRRQNNGRKDRGDRTPREGRDNSSRDNNARDNSTRDNGNRDNANRDNSNREG
RDDQRRNNRRPAQQATTPQAQTEVVEADKTQREEQPARRGDRQRRRPQDDKRQVSQDVKA
KVDADIVTAVVEEAQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNVLESSVSEPVSHI
TAPVVQEEVKLLPQASSQADDEASNDRNGNNENGMPRRSRRSPRHLRVSGQRRRRYRDER
YPTQSAMPLAGAFASPEMASGKVWVRYPVAQPFEPAFVENPVEEQQPVEQVQEVTAVVEQ
VAVVAAPVVVAAPVVAAVAETVLPTPAPQHKPGGSSSSAAAVPGRAPVVVETAIVETAIV
ETVTVAPIVETHAVEEPTQVTEIAPAAETITTVEPVIEDAVATETVVEATIEPVAVVEEA
TQELVVEETAVVVDDVTVAEEAVVEDVTVEEAVVEAPIVAETVVEDSVAEEATVTELPTD
TAPVAVAPQQPVVAHPEGVLFKHYASAPMTKAPAPDYQPASPSQGHWERPAFDFAGKGSA
GGHAAATKATAPATKPQSVE
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggtaaaatcacccgaatcgaacccagtctggaagccgcttttgttgattac
ggcgctgaacgacatggtttcctcccattaaaagaaatttctcgcgaatatttccctagt
aattattcctctcatggccgcccaaacatcaaagatgtgctgcgcgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggtaataaaggtgccgcactcacgactttcatc
agcctggctggtagttatttagttctgatgcctaataacccacgcgctggtggtatttct
cgccgtatcgaaggtgatgaccgcactgaactgaaagaagccctatcctccctgcaattg
cctgatggcatgggtctgattgttcgtacagccggtgttggtaaatctgctgatgcgcta
caatgggacttatcgttccgtctgaagcactgggatgcgattaaaaaagccgctgaaggc
cgccctgcgccgttcttgatccatcaggaaagtaacgtaattgttcgtgctttccgtgat
tatctccgcccggacatcggcgaaatcctgatcgataaccctaaagttctcgaactggct
aaagagcatatcgcagcgcttggccgcccggatttcagcagcaaaatcaaattgtatagt
ggcgaaatcccattattcagtcactaccagattgagtcacagattgaatctgcgttccaa
cgtgaagtgcgtctgccttccggtggttctatcgttattgataccaccgaagccctgaca
gcgattgatatcaactctgcacgtgctacccgtggtggtgatatcgaagaaacggcattc
aataccaaccttgaagccgccgatgaaattgcccgtcagttgcgtctacgtgacttaggt
ggtctgattgtcatcgactttatcgatatgacaccggtacgccaccaacgtgaagtagaa
aaccgcttacgtgatgccgttcgtcaagaccgtgcgcgtatccagattggtcgcatctct
cgcttcggtttactggaaatgtcccgccagcgcctcagcccatcactgggtgagtcaagc
caccatgtgtgcccacgctgtagcggcaccggtactgtgcgtgacaacgaatctctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccattgtgccggtacaaattgcatcgtatctgctgaacgaaaagcgtgaatctgttaat
gccatcgaaaaacgccaggggggtgtgcgggcagtgatcgtaccaaacgatcagatgcaa
acgccgcattactctgtacttcgcgtgcgcaaaggcgaagaagtcccttctctcagctat
ttgctgccacagctgcatgaagctgaaatggcacaaccactggaagaagcggccatcgaa
cgtaaacgcccagagcaacctgcgctggcgacgttctctctgccaacagaagtgccacca
gagtcagcccctgctgctgcgaatgttaaaccaacagccgcaccacaggccgcaacagct
gcggtggcagaacaacctggtttccttagccgcctgttcagtgggctgaaaggtctcttc
ggtggttcaacagaaactgaggtaaaaccggttgaagttgagaaaactgaaaccaacgaa
aaccgtcgtaatgatcgccgtaatcctcgccgccagaataatggccgcaaagaccgtggt
gaccgcacgccgcgcgaaggtcgtgataacagtagtcgcgacaacaatgcccgtgataat
agcactcgtgataacggcaaccgtgacaatgctaaccgcgataatagcaatcgcgaaggc
cgtgacgatcagcgccgcaataatagacgcccggcgcaacaagcaacgacaccacaggca
cagaccgaagttgttgaagcagataaaacacagcgtgaagaacagccagcgcgtcgcggt
gatcgccaacgtcgtcgcccacaagatgataaacgccaggtatcacaagacgttaaagct
aaagttgatgcggatatcgtcacagctgtagtcgaagaagcacaacctgagcaagaagaa
cgtcaacaagtgatgcagcgccgtcaacgtcgccaattgaatcagaaagtccgtattcaa
tccgcaaatgatgagctgaatgttctggaaagttctgttagcgagccagtttcccacatt
actgcgccagtagtgcaggaagaagtgaaattgctgccgcaagcaagctctcaggccgat
gatgaagcatcgaacgatcgtaatggcaacaatgaaaatggcatgccacgtcgctctcgc
cgctcacctcgccacctgcgtgtcagtggtcaacgccgtcgccgctatcgtgatgagcgc
tacccaacccagtcagctatgccgctggcgggtgctttcgcctcaccagaaatggcctca
ggtaaagtgtgggtgcgttatccagtagctcaaccgtttgaacccgcctttgtggaaaat
ccggttgaagaacaacagccagttgaacaggtgcaggaagttactgctgtagtagaacaa
gtcgctgttgttgcagcacctgttgtcgttgctgcgcctgtcgttgctgccgtagctgaa
actgtcttgccgactccagccccacaacacaaaccaggtggttcttcatcatccgctgct
gccgtaccgggccgtgcgccggttgttgtggaaacggcaatagtggaaacagcaattgta
gaaacggtaactgtagcgccaatcgttgaaacccatgctgttgaagaacctactcaggta
actgaaattgcaccagcagcagaaactattacgacagtcgagccagtgattgaagacgct
gtggcaacagaaactgtcgttgaagcgacaatagaacccgtcgctgtcgtggaagaagcc
acccaagagcttgttgttgaagaaacagcagttgtagttgatgacgtgacagtcgctgaa
gaagctgtagttgaagatgtgacagttgaagaagcggtggttgaagcaccaatcgtggcg
gaaaccgtggttgaagattctgtggcagaagaagctacggtaactgaattaccaaccgac
acagctcctgttgccgttgcaccgcagcagccagttgttgctcatcctgaaggtgtgtta
ttcaagcactatgcttcagcgccaatgaccaaagcaccggcacctgattaccaaccagca
tcgccaagccaaggccattgggaacgcccagcctttgattttgcaggtaaaggttctgcg
ggtggtcatgcggcagcaactaaggcaacagcaccagcaacaaagccacaatcggttgaa
tag
DBGET
integrated database retrieval system
