Yersinia enterocolitica 2516-87: CH48_1995
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Entry
CH48_1995 CDS
T03644
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yet
Yersinia enterocolitica 2516-87
Pathway
yet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH48_1995 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yet03021
]
CH48_1995 (rpoC)
03400 DNA repair and recombination proteins [BR:
yet03400
]
CH48_1995 (rpoC)
Enzymes [BR:
yet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CH48_1995 (rpoC)
Transcription machinery [BR:
yet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CH48_1995 (rpoC)
DNA repair and recombination proteins [BR:
yet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CH48_1995 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJJ27755
LinkDB
All DBs
Position
2231228..2235448
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESTSRTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKSTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagatatgatccgttcctggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacat
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacattgaactggcttctccgactgcgcacatctggttcctgaaatcgttg
ccatcccgcatcggtttactgctggatatgccattacgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgaccaacttagaacgtcgccagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaagctattcaggccctgttgaaaaacatggatctggaagctgagtgtgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgact
gtgctgccagtgctgccgccagatctgcgtccattggttccgttggatggcggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggctgctccggacatcatcgtgcgcaatgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgtggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttattaccgttggcccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagttgttcaagccgttc
atctacggcaagctggagttgcgtggtcttgctaccacaattaaagccgccaagaagatg
gttgagcgtgaagaagccgttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagttgcacccactggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagca
cgtgcgttgatgatgtctactaacaacatcttgtcaccagcgaacggcgagccaatcatc
gttccttcacaggatgttgtattgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcatctctgcatgcgcgggtaaaagtccgtattactgaagaaattcgtaataccgaa
ggcgaaagcacttcgcgtaccagcattatcgatacgactgtaggtcgtgctattttgtgg
atgatcgtcccgaaaggcctgccttactctatcgttaaccagccgctgggcaaaaaagct
atctccaagatgctgaacacttgttatcgcatcttgggcttgaaaccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggtgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatccggtctggtaacagcaggcgaacgttataac
aaagtgatcgatatctgggccgcagctaacgaacgtgttgccaaggcgatgatggataac
ttgtctgtagaagatgttgtcaaccgtgacggcgttgtcgaacagcaagtgtcattcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcagggatgcgtggcctgatggctaagccagatggttcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtcgtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagaagttatcaagccgggtacggctgatattctggttccgcgt
aacacactgttggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagtatccaagttaagaacaaaggtagcttgaaactg
agcaatgccaagttcgttaccaatgcagctggcaagctggttattacttctcgtaatact
gagctgaagctgatcgacgaattcggtcgtactaaagaaagctacaaagtgccttacggt
gcagtaatgggcaaaggcgatggcgcagaagtccagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagcggtttcatccgcttcgcggacatg
gttgacggccagaccattactcgccagaccgacgaactgacgggtttgtcttctctggta
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagctcgtcgtccgaaagagcctgcaattctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatttcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgacggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcacgcggttacccgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaagcaccatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gagatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaatcgaggcc
acgttcacccgtgacctgctgggtatcactaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagaaaacgtcatcgtgggccgtctgatcccagccggt
accggttatgcttatcatcaggatcgtatgcgccgtaaagcacagggtgaagcaccagta
gttccgcaagtgagcgcggacgaagcgactgctaacctggctgaattgctcaacgctggt
tttggtaacagcaaagactaa
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