Yersinia enterocolitica 2516-87: CH48_2653
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Entry
CH48_2653 CDS
T03644
Name
(GenBank) exonuclease SbcC family protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
yet
Yersinia enterocolitica 2516-87
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yet03400
]
CH48_2653
DNA repair and recombination proteins [BR:
yet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH48_2653
Archaeal homologous recombinant proteins
CH48_2653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
cobW
Bac_DnaA
SMC_N
AAA_21
nSTAND3
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AJJ27617
LinkDB
All DBs
Position
complement(2966176..2969865)
Genome browser
AA seq
1229 aa
AA seq
DB search
MRILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LNVTPSQNELMTRHTAESLAEVEFEVKGTRYRAFWSQRRAKNSPEGNLQAPKVELALCEN
GKILADKVRDKLDMVAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSEHVFEQHKQAKIALDALHQRASGIELLNEEQRADLAQQLDVLGEQEKQLASEQRV
NQKQINWLAGWLQQQKNVLEYQQQQKIIEQEYLQAQPELQRLARSEPAEKLRPLLRECSR
SLQDLQQIQLRITTLTQQQQQLQTQLTPLTQALEQANLARQQHATNQHEQETLIEQKVVP
LDNLIAQQQHSLMLLGTQLEQLRTKENQNKQQLELNKQQFKLAHQRLQQLTEYTQQHAHH
QHWEKNLPLWREQFRQLQMQQQQSVESEQQLQQQATLLATLQQQIDTLNEQDKQQQAALV
QAHSQTGSIQQQLSALEQQQPSAQLRQQLIELQQQRPVRQQLAALSPLAQQVQALHDKQQ
QQFVAQQQQLQLLEQQLAEKRQLYKQQKQHLTDLETLLEREKQIVRLESERAKLQPGEAC
PLCGALDHPAITEYQAVKPSETAVRVEELRLQVEQLFTAGTELRTQVASMQQQQLRLEQE
LQHSQQQLTDYHQQWHALTQPLTLTFALNEPETLITWLEQQEQSEQTCQLKLAEYERLNQ
QYQQAKDILTQAEQQQQKHQQQLALISQRRQDAEQAHQKLHAQHQHQLVELAKTRQDFSH
ALAELSLSMPEADQQQSWLAVREEENQRWHQYQQEQQQLALGQKALETQIENERRHLQEC
IDQLSILTQQHQQTETLLQQQKQQRQALFGDRSVVEARQLLRQQQQQVELAQQNTAQALQ
QAQSQLNLLSGELTGLEQQCNQNQQRATAAQAELRQALASSEFDDEAALTAALLSEEERQ
RLQQLQQQLSERQQQANIRHQQASEALAQLIQSCPDGVDQTSELAVLQRQSEQLLAQLKA
NTLRQGELRNQLESDIIRRRNQHALFEQIEHSQQQYDDWSYLNHLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYQLQRKTSDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDNIFRVNQD
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttaagcctacggctgaaaaacattaattctctacagggtgaatggaagata
gatttcaccgccgaaccttttgccagcaacggtttattcgcgataaccggcccgactggg
gcagggaaaaccaccctgctcgatgccatttgtctcgcgttataccaccagaccccgcgg
ttgaatgtcacccccagccaaaacgaactgatgactcgccacacggcggagtcactggct
gaagtcgagtttgaggtaaaaggaacgcgttatcgtgctttctggagccaacggcgcgct
aaaaatagcccggaaggaaatctgcaagcgcctaaagttgagttggcgctatgcgaaaac
ggcaagattctggccgataaagtgcgcgataagcttgatatggttgccgcaatcaccggg
ctggattttggccgctttaccaaatcgatgatgctgtcacaggggcaatttgctgcattt
ctcaatgctgatgccaatgatcgcgcggaattattggaagagttaaccggtacggacatc
tatggtcggttatctgaacacgtatttgagcaacataagcaagccaagatcgcactagat
gcattgcatcaacgcgccagcggtattgaactgctaaatgaagagcagcgtgcagatctg
gcgcaacaattagatgtactcggtgaacaagaaaagcagcttgcttcagaacagcgggta
aatcaaaagcaaataaattggctcgccggatggctgcaacagcaaaaaaatgtgttggaa
tatcaacagcagcagaaaatcattgagcaagaatatctgcaagcacaacccgaactgcaa
cgcttggcccgtagtgaaccagcagaaaagttacgccccctattacgcgagtgttcccgt
agcctacaggatttgcagcagatacaactgcgcatcaccacactgacgcagcagcaacag
caacttcaaacacaactgacgccactgactcaggcgctggagcaagccaatcttgcccgc
cagcaacacgcaactaatcagcatgagcaagaaacactgatcgagcaaaaagtcgttccg
ctggataaccttattgctcagcaacagcactcattaatgctactaggtacgcaacttgaa
cagttacgcaccaaagaaaatcaaaataaacaacaacttgaactgaataaacaacagttc
aagctagctcaccagcgcctgcaacaactgactgagtacacccagcagcatgcccaccat
caacactgggaaaaaaacctacctttgtggcgtgagcagttccgtcaattacaaatgcag
caacaacaatcagttgaaagcgaacagcagttgcaacagcaagccacgttactggcgacc
ttacaacagcaaattgacacactgaatgaacaagataaacagcaacaagctgcattagta
caagcccactcgcagaccggtagtattcagcaacaattgtcagcacttgagcaacaacag
ccctccgcgcagttacgccaacaactcatcgagctacaacaacaacggcctgtgcgacag
caattagcggcattatcgccattggcgcaacaagttcaggcgttgcatgataaacagcaa
cagcagtttgttgcccaacagcagcaactacaattactcgaacaacagctagcagaaaaa
cgtcagttatataaacaacaaaaacagcatctgactgatctggagactttgctggaacgc
gaaaaacaaatcgtccggttagagtctgaaagagccaaactgcagccaggagaagcatgc
ccattatgtggtgcattggatcaccctgccattactgagtatcaggcagtaaaaccctca
gaaacggcggtgcgagtagaagaactgcgacttcaggttgaacaacttttcactgcggga
actgaattacgcactcaggtcgcaagcatgcagcaacaacagttgcgcctggagcaagag
ttacagcacagccagcagcaactgacagattatcaccagcaatggcatgcactgacacaa
ccattaacgctaacatttgcgttgaatgaacctgagaccttaataacctggttggaacaa
caagaacaatcagagcaaacctgtcagctaaaactggcggaatatgaacgattgaatcaa
caatatcaacaagctaaagatattctgactcaagcagaacagcagcagcaaaaacatcag
cagcaattggccctaattagtcagcgccgacaagatgccgagcaagcgcaccaaaagttg
catgcacaacatcaacaccaactggttgaattggcaaaaacacgtcaagactttagccat
gctctggctgagttatcgctatcaatgcctgaagcagaccaacaacagagctggctggca
gtgcgggaagaggaaaatcagcgctggcaccagtatcagcaggaacaacaacagttggcg
ctggggcaaaaagcactggaaacgcagattgaaaatgaacgtcgccacctgcaagagtgc
attgatcagctatctatactcacacaacaacatcagcagaccgagacactgttgcagcaa
caaaagcaacaacgtcaggcgctatttggtgaccgcagtgtggtagaagcccgccagtta
ttgcgccaacaacagcaacaagtagaactggctcaacaaaatacagcacaagccctgcaa
caggcacaatctcaacttaacttgctctccggcgaactaacggggctagaacaacagtgc
aatcaaaatcaacaacgagccaccgctgcccaagctgaattacgacaagcactggcaagc
agtgaatttgatgatgaggcagccttaaccgccgcactcctgagtgaggaagaaaggcag
cgtttgcagcaattgcaacagcaactgagtgagcgccagcaacaggccaatatccgtcac
caacaagccagtgaagcattggctcaactgatacaatcttgccctgatggcgtcgatcaa
acatctgaattggcagtattacagcggcaatcagaacaattactggcccaactgaaagcc
aataccttacggcaaggtgaattacgcaatcagctagaaagcgacataattcgacgtcgc
aaccaacatgcactgtttgagcaaattgaacatagtcagcaacaatatgatgactggagc
tatctcaatcacttaattggctctaaagaaggtgataaattccgcaagtttgcccaaggc
ttgacactcgatcatttggtctatctggcaaacaaccaactcagccgcctacatgggcgc
tatcaattgcagcgtaaaaccagcgacgcgctggaactacaagtggtggatacctggcaa
gcggatgctatccgtgacacccgcaccttgtcagggggagaaagcttcctggtcagctta
gctctggctttggcgctatcagatctggtcagccataaaaccagtattgattcactcttt
ctcgatgaaggcttcggtaccttggatgcggagacactggatacggcactggatgccctg
gatagcctgaatgcatcgggtaaaaccattggcgttattagtcatgtcgaggcgatgaaa
gacagaatcccagtgcaaattaaagtgaaaaaagtcaacggattgggtgttagccgctta
gataacattttccgagtcaatcaagactaa
DBGET
integrated database retrieval system
