Yersinia enterocolitica 2516-87: CH48_3547
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Entry
CH48_3547 CDS
T03644
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
yet
Yersinia enterocolitica 2516-87
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yet03016
]
CH48_3547 (rnd)
Enzymes [BR:
yet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CH48_3547 (rnd)
Transfer RNA biogenesis [BR:
yet03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CH48_3547 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AJJ26520
UniProt:
A0A0E1NBY9
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All DBs
Position
3901734..3902855
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AA seq
373 aa
AA seq
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MNYQLITTDSALQQVCEQARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPI
TQWQPFRELLQDVSVVKYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFSGRSLSCGFAM
LVNELEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLASKLVEATEAAGRMDAAK
DECELLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLASWRLRQARERDLAVNFVVR
EENLWQVARYQPTSLGELDSLGLSGQEIRYHGRTLLALVAEGNAVPEDQLPPPVINLIDQ
PGYKKVFKDIKALIVSVSERSGLSSELLASRRQINQLLSWHWKLKSTETQPELLSGWRGD
LLATELTEILQQY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcaccaccgacagtgccttacagcaggtctgcgaacaagcccga
acacatgcccatgtggcgctggacacagagtttgtcagaacccgcacctactatcctcag
ttgggcctgattcaactgtatgacggcgaaaaactttcactgattgaccctttgcccatt
acgcagtggcaacctttccgcgagttgctccaagatgtgagtgtggtgaagtatttgcat
gcgggtagtgaagatctcgaagtgttcttgaatgcgtttgaactcatgcccacgccgatg
attgatacccaagttttggccgccttttctggccgctcattatcttgcggctttgccatg
ctggtgaatgaacttgaaggtgttgaattagacaaaagcgaatctcgcacggattggatt
gctcgtcctctgagtgaaaaacagtgtgattatgcagctgctgacgtattttacctgtta
ccgttagccagcaaattagttgaagcgaccgaagcagcagggcgtatggacgccgctaaa
gatgaatgtgagctgttgtgtcgccgtcgcagtgaaacactcgatcccgaattagcctac
cgtgaaatcaccaatgcctggcagttgcgcggccatcagttggcttgtctgcaaaaattg
gcgtcatggcgcttacgtcaggcccgtgaacgtgacctggcggtgaactttgtcgttcgc
gaagagaatctgtggcaagttgctcgttatcagccaacttcgctgggtgagcttgactca
ctgggcttaagtgggcaagagattcgctatcatggccgtaccttgctggcgttggtagcg
gaaggtaatgctgttcctgaggatcagttgccaccaccggtgatcaatctgattgatcag
ccaggttacaaaaaagtctttaaagatattaaagcacttattgtgtcggtcagtgagcgc
agtgggctaagtagcgaattgttggcgtcacgccgccaaataaaccaattactcagttgg
cattggaaattgaagtcaacagaaactcaacctgaattattaagtggctggcgtggggat
ttattggctacggaattgactgagattttacagcaatattaa
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