Yersinia enterocolitica 2516-87: CH48_3732
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Entry
CH48_3732 CDS
T03644
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yet
Yersinia enterocolitica 2516-87
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yet03019
]
CH48_3732 (hrpA)
Enzymes [BR:
yet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CH48_3732 (hrpA)
Messenger RNA biogenesis [BR:
yet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CH48_3732 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
Ubiquitin_3
AAA_16
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AJJ29585
LinkDB
All DBs
Position
4094098..4097985
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AA seq
1295 aa
AA seq
DB search
MKSSLAALSSQLGELMLRDQQRMRRRLQGARKVHNPEAVEAITREIEAEIATAMQRVNSR
RAACPAISYPENLPVSQKKQDLYNAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSSHFNNA
PIIEVSGRTYPVEVRYRPIVDDADDVERDQLQAIFDAVDELGRESPGDILIFMSGEREIR
DTADALMKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGIPVNSVAADYRSVHTAILTGLLSHIGQKDVEKQEYTGARNARFAIFPGSGLFKKPP
KWCMVAELVETSRLWGRIAARIEPEWVEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLF
GLPIVTERKINYGPIDPPLCRELFIRHGLVEGDWQTRHAFFRANLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRISRDVISARHFDSWWKKISQTQPELLNFEKTMLIKDGANKVNP
LDYPNFWYQGSLKLRLSYQFEPGTNADGVTVHIPLPILNQVQEEGFDWQIPGIRRELVVA
LIKSLPKPVRRNFVPAPNYAEAFLARVTPLETSLLDALERELRRMTGVTVSRESWQWEQV
PDHLKMTFRVLDDKNRTLREGKDLAALKLQLQEKVQETLSAVADDGIEQNNLHIWSFGSL
PVCYEQRRGGYEVKAYPALVDEKDSVAIRLFDTEAQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGKVMDLIDDCIACGVDKLVAQYGGPVWQEADFALLQEKVRAEL
NDTVVDIAKQVEQILTTVFSINKRLKGRVDISQALALSDIKAQLGGLIYRGFVTNNGWKR
LPDTLRYLHAIERRMEKLAVDPHRDRAQMQRVEHVQQMWQQWLNRLPPKRQQDEDVKEVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcgcagcattatcctcccaactcggtgagttgatgctccgtgaccaa
cagcgtatgcggcgtcggctgcaaggcgcacgaaaagtccataatcccgaggccgtagag
gcgattacccgcgaaatcgaagctgagattgccactgcaatgcagcgggttaacagtcgt
cgggcagcatgtccggctatctcgtatcccgagaatttgccggtcagtcagaagaaacaa
gatctctataatgctattcgcgataatcaggtggtcattgttgccggtgaaaccggttcg
ggtaaaaccacacaattaccgaaaatctgcctggaattagggcgtggtgtcaaaggactt
attggtcatacccagccgcgccgccttgctgctcgtaccgtggcaaatcgtattgctgat
gagctagacacctcacttggcggctgtgtcggttataaagtgcgatttaatgatcaagtg
ggtgagaacaccctcgttaagttgatgactgacggtattttgctggctgaaattcagcaa
gaccgcctgctgatgcaatatgacaccttgattattgatgaggcgcatgagcgcagtctg
aacattgatttcatcttggggtatttgcgggagttattgccaaagcgccctgatctgaaa
gttattatcacttcggcgaccattgatccgcagcgtttttctagccatttcaataatgcg
cccattatcgaagtctctggccgtacctatccggtggaagtgcgttatcggcctatcgtg
gatgatgccgatgatgttgagcgtgatcagttacaggccatttttgatgcggtagatgaa
ttagggcgcgaaagtcccggcgatatcctgatatttatgagtggcgagcgggaaattcgt
gatactgctgacgcgctgatgaagcagaatttgcctcataccgaagtgctgccgctgtat
gctcgcttatccaatagtgagcagaatagggtgtttcagtctcatcatgggcggcgcatt
gtgctggcgactaacgtggcggaaacttcactcaccgtgccgggcatcaagtatgtcatc
gatcccggaactgcacgcattagccgctatagtttccgtactaaagttcaacggttgccg
attgagccggtttctcaagcctcggctaatcagcgtaaaggccgctgtggccgagtctct
gacggtatctgtatccgtctttattccgagcaagatttcctttcacgtcctgaattcact
gatccggaaattctgcgtactaatttggcctccgttatcctgcaaatgacctcattgggg
ttaggggatatcgccgccttcccatttgtggaagctccggacaagcgcaacattcaagat
ggtgtgcggctgctggaggagctaggggctatccaaacggccagtaacggccatcaacaa
ttaacaccgctaggtcggcaattggcccaattgccagttgatccccgtttggctcgaatg
gtgttggaagcccagaaaagtggcagtgtgcgggaattgatgatcatcacctcggcattg
tctatccaggacccacgtgaacgtccgatggataaacaacaggcctccgatgaaaaacat
cgacgttttgccgataaagattctgatttccttgcatttgttaatctatgggattacctg
aaagagcagcaaaaagaactatcatcggcgcaattccgtaaattatgccgtagcgatttc
ttgaactatttgcgggtgcgcgaatggcaggatatctatacccaactgcgtcaggtggtg
aaagagctgggtattccggtcaatagcgtcgccgcagactatcgcagtgttcatacggcc
attctgaccggattactatcacacatcggccagaaagacgttgaaaagcaagagtataca
ggtgctcgcaatgcccgttttgccatcttcccaggctccggtttattcaaaaaaccgcca
aagtggtgcatggtggccgaattggtcgaaaccagccgcttatgggggcgcattgctgct
cgtattgaaccagaatgggttgaacccttggcacagcacttggttaaacatcactatagc
gatccgcattgggagaaagcgcaaggggcggtgatggccagtgagaaagtgaccttattc
gggttgcctatcgtcactgagcgcaagatcaactatgggccaattgatccgccgctgtgt
cgcgagttatttatccgtcatggcttggttgaaggggattggcaaacacgccatgctttc
ttccgcgctaatttaaagctattggctgaagttgaagaacttgagcacaaatctcgtcgc
cgcgacattctggttgatgatgagacattgtttaacttctatgaccagcgtattagccgt
gatgttatttccgcacgtcattttgatagctggtggaagaaaatcagccagacacagccc
gagctgctcaactttgaaaaaaccatgcttatcaaggatggtgcaaacaaagttaacccg
ttggattatccgaacttttggtatcaagggtcactcaaactacggctttcttatcaattt
gagcctggtacgaatgctgatggggtcactgtccatatcccgctgcctatcctgaatcag
gttcaggaagagggttttgactggcaaattccggggatacgccgtgagctggtggtggcg
ttaatcaagtcattacctaagccggttcgccgcaattttgtgcctgcacctaattatgcc
gaggcattcttagcgcgggtaaccccgttggaaaccagcctgctggatgcattagagcgc
gagttacggcgtatgactggagtgacagtgtcacgagaaagctggcagtgggagcaagtt
cccgaccacctaaaaatgacgttccgcgtgctggatgataaaaaccgaactttgcgtgag
gggaaagacctcgccgccttgaagctccaactccaggagaaagtacaagagacgctttca
gcggttgccgatgacggtattgagcaaaataacttacatatctggagcttcggctcactt
ccggtgtgctacgagcaacgccgaggaggatatgaagtcaaagcatacccggcattggtg
gatgagaaagacagtgttgcgattcgcttatttgatacagaagcccaacagcaacaggcc
atgtggcaggggacacgccgtttattgctgctaaatattccttctccgattaagtattta
catgaaaagttgccgaacaaatccaaactcggcctctatttcaatacttatggcaaagtg
atggatctaattgatgattgcattgcttgtggggtggataaacttgtcgcgcaatatggt
gggccggtatggcaagaggctgatttcgctttgctacaagaaaaagttcgggccgaatta
aacgatactgttgtggatattgccaaacaagttgaacagatcctgactactgtattcagt
attaataaacgtttaaaaggccgggtcgatatctcgcaagcattagcgctttccgatatc
aaagcacagcttggcggcctgatttaccgcgggtttgtcaccaataatggttggaaacgt
ttaccggatacattgcgctatctgcacgccattgagcgacggatggagaagttagccgta
gatcctcatcgtgatcgtgcccaaatgcaacgggtggaacatgtacaacagatgtggcag
caatggctcaacagattgccgcctaaacgtcaacaagatgaagatgttaaagaagttcgt
tggatgattgaagagctgcgcgtgagtctatttgcccaacaattgggaacaccatacccc
atatcagataagcgtattttacagactatcgaacaactctctgcttaa
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