Yersinia enterocolitica 2516-87: CH48_3872
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Entry
CH48_3872 CDS
T03644
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
yet
Yersinia enterocolitica 2516-87
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yet03016
]
CH48_3872 (rnb)
Enzymes [BR:
yet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH48_3872 (rnb)
Transfer RNA biogenesis [BR:
yet03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CH48_3872 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AJJ29389
UniProt:
A0A0E1NK34
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Position
4241197..4243131
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIVPDHPLLRDAIQCRPVRELTH
DFQTGDWAVAEMHRHPLKGDRGFNADLTAFITDGEDHFVPWWVTLARHNLEREAPVMVES
ALHDANLQREDLTALNFVTIDSVSTEDMDDALHVQDNGDGSLLLTIAIADPTAYVDENSE
LDLIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTIAADGTLGEGIHF
SAAWVESKAKLVYDEVSDWIEGSGDWQPQNADIAEQITLLKRVCEARSNWREKHALVFKD
RPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCAAIALRDNLGFGIYNVHTGFD
PALVEQAANVLQANGVEADPQALLTLPGFCELRRHLDALPTQFLDSRIRRFQTFAEISTV
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQQAEKPQDEITVQLAERRRLNRM
AERDVGDWLYARYLQPMAGTDTRFPAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVVARPVV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagactcca
cgcgtcgaaggcgtagttaaaggtactgagaaaggctttggctttcttgaggtagacggg
cagaaaagctactttattccgccgccacaaatgaaaaaagtcatgcatggcgatcgtatt
attgccactcttcacaccgataaagatcgtgaaattgctgagccggaaaccctggttgag
ccatttttatcccgatttgttggccgtgtgcaacgaaaagatgaccgcctgtctatcgtt
cctgaccatcctctgctgcgtgatgccattcaatgtcgtccagtgcgtgaactgactcac
gatttccagaccggtgattgggcggtggccgagatgcaccgccatccattaaaaggcgat
cgtggctttaatgccgatctgactgcttttattactgatggtgaagatcacttcgtgcct
tggtgggtcaccctggcgcgccataatctggagcgtgaagcgccagtcatggttgaatca
gcgttacatgatgccaacctgcaacgggaagatttgactgcgcttaattttgtcactatc
gacagcgtcagcaccgaagatatggatgacgcgttgcatgtgcaagacaacggtgacggc
tcgctgttgttgaccattgctattgctgaccctactgcttatgtcgatgaaaacagtgag
ttggacttaattgcccgtaaacgtgcatttaccaactatctgccgggctttaacatcccg
atgctaccgcgtgatttatccgataatctttgctcactgcgaccaaatgaacgccgcccg
gtattggtgtgtcgcgttactattgctgctgatggcacgctcggtgaaggcattcacttc
tctgccgcctgggttgagtcgaaagccaaactggtttatgacgaagtctctgattggata
gaaggcagtggtgactggcagccacaaaatgctgatatcgctgaacaaatcacattatta
aaacgtgtttgcgaagcgcgcagcaattggcgtgaaaagcatgcattggtgtttaaagac
cggcctgactaccgcttcttgttgggcgaaaaaggcgaagtgctggatatcattgttgaa
caccgccgcattgctaaccgtattgttgaagagtgcatgattgccgccaacgtctgtgcc
gctattgcgctgcgtgataatcttggttttggcatctataacgtgcataccggttttgat
cccgcgctggttgagcaagccgctaatgtgttgcaagccaatggggtggaagccgatccg
caagcattgctgaccttacctggtttctgtgaattgcgccgtcatcttgatgccttaccg
acccagttccttgatagtcgcatccgccgtttccagacattcgctgaaatcagcaccgtt
cccggcccacacttcggtttagggcttgaagcttacgccacctggacctcgccaattcgt
aaatacggcgatatggtcaaccatcgtctgctgaaagccattattactggtcagcaagcg
gaaaaaccacaagacgaaatcacggttcaattggccgaacgccgccgtttgaatcgcatg
gctgaacgtgatgtcggtgattggttatatgcccgttacctacaaccgatggcaggcacg
gatacgcgcttcccggcggaaattattgatgtcactcgcggtggcctacgggtgcgctta
ctggataacggcgcagtcgcctttattcctgcgccctttattcatgcggtgcgtgatgag
atggtgtgcagccaggaaacaggcaccgtacaaatcaaaggtgaaacggtttacagccag
agcgacaaaattgaagtgcgcattgccgaagtgcggatggaaacgcgcaacgtggtggcc
cgtccagtggtttga
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