Yersinia enterocolitica WA: CH47_1090
Help
Entry
CH47_1090 CDS
T03643
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
yew
Yersinia enterocolitica WA
Pathway
yew03030
DNA replication
yew03430
Mismatch repair
yew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH47_1090 (holB)
03430 Mismatch repair
CH47_1090 (holB)
03440 Homologous recombination
CH47_1090 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yew03032
]
CH47_1090 (holB)
03400 DNA repair and recombination proteins [BR:
yew03400
]
CH47_1090 (holB)
Enzymes [BR:
yew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CH47_1090 (holB)
DNA replication proteins [BR:
yew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CH47_1090 (holB)
DNA repair and recombination proteins [BR:
yew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CH47_1090 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Cytochrom_C
DUF6587
Motif
Other DBs
NCBI-ProteinID:
AJI84620
LinkDB
All DBs
Position
1166335..1167342
Genome browser
AA seq
335 aa
AA seq
DB search
MKWYPWLTAPYRQWVGQQIAGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCG
ECHSCRLMLAGNHPDWYVLTPEKGKSSLGVELVRQQIEKLYSHAQQGGAKVVWLPHAELL
TDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSRCFYWHLACPDTALSLQWLQRQI
PAEPVSMLAALKLSEGAPLAAERLLQPERWATRTTLCHALHSALHSSDLLSLLPQLNHDD
APERLQWISSLVLDALKWQQGAGQFAVNQDQLPLVQQLAGMAATPVLLHSAQALGHCRHQ
LLSVVGVNRELLLTEFLLNWETALTTGTYSTLSSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggtacccgtggctcactgcgccttaccgtcagtgggtagggcagcagattgcc
gggcgaggtcatcatgcattactgctgcactctttgcccggaaatggcgaagaagcactg
atttacggtattagccgttggttgatgtgccagcaacgacaaggcgagaaaagctgtggt
gaatgtcatagttgccgcttgatgttggcgggcaatcatccggactggtatgtgctgaca
ccggagaaagggaaaagcagtctcggcgttgagctggtgcgccaacagattgaaaaactc
tattctcatgctcagcaaggcggggcaaaagtggtgtggcttccccacgcggagttgctt
accgatgcggcggcgaatgcgttgttaaaaacgttggaagagccgccagagaaaacctat
tttctacttgattgccatcaacctgccagtttgcttgcgacactgcgcagccgctgcttt
tactggcatctggcctgcccggataccgcgcttagcctgcaatggcttcagcggcagatt
ccagcagaacctgtctcgatgctggcggcacttaaattgagtgaaggtgcgccgttagcg
gccgagcgtttactgcaaccggaacgctgggccaccagaaccactttgtgccatgcattg
catagcgcactgcacagctcggatttactgtcgttattaccgcaacttaaccatgatgat
gctccagagcgcttacaatggatctcttcattggtgttggatgcgttgaaatggcagcaa
ggcgcgggtcaatttgccgtcaaccaggatcaattgcctctggtgcagcaattggctggc
atggccgcaacaccggtattgctccattcagcccaggcgctgggccattgccgccatcaa
ttattatcggtggtaggtgttaatcgtgaattattgctcaccgagttcctgcttaactgg
gaaacagcgctgaccacgggcacttattccaccttatcttcgttgtaa
DBGET
integrated database retrieval system
