Yersinia enterocolitica WA: CH47_3279
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Entry
CH47_3279 CDS
T03643
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yew
Yersinia enterocolitica WA
Pathway
yew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH47_3279 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yew03019
]
CH47_3279 (recQ)
03400 DNA repair and recombination proteins [BR:
yew03400
]
CH47_3279 (recQ)
Enzymes [BR:
yew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH47_3279 (recQ)
Messenger RNA biogenesis [BR:
yew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH47_3279 (recQ)
DNA repair and recombination proteins [BR:
yew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH47_3279 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AJI81890
UniProt:
A0A0E1N9L1
LinkDB
All DBs
Position
complement(3563721..3565571)
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AA seq
616 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIAL
TATADEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQSCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLG
LLSQNIAMFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAM
IRDHVDNIHVDNNVDD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaatagggagttactggcagagcaggtattgcgagatact
ttcggctaccagcaattccggcccggacaacaagaaattatcaacgccactctatcaggg
caagattgtctggtagtgatgccaacgggcggcggtaaatccttgtgttatcagatcccg
gcactggtgacggatggcttaacgctggtggtctcccccttaatttctttgatgaaagat
caggttgaccaactgctggcctatggcgtgggcgcggggtgcctaaattcatcacaaaca
cgcgagcagcaattggcggtgatggacggctgccgcagcggtcagattaagctgctatac
atcgcgcctgaacggctggtgatggagagctttcttgatcaactgcaccagtggcgtcct
gcgctgttggcggtggatgaagcacattgtatctctcaatggggtcatgattttcgcccg
gaataccgtgcccttggtcagttaaagcagcgtttccctaatttaccggtgatagcactg
accgcgacggctgatgaagccacgcgcggcgatatcgtgcggttactcaatctggatcag
ccattaattcaggtcagcagctttgatcgcccgaatattcgttacaccctggttgagaag
ttcaaaccgcttgatcaactgtggcgttttgttcaagaccagcgtggcaaaagtggcatt
atttactgcaatagccgggctaaggtagaagacaccaccgcgcgcctacaaagccgtggc
ttaagtgtggcggcttaccatgccgggctggacaatgagcgccgcgcacaggtgcaggaa
gcttttcagcgcgatgatttgcaagtggtggtcgccaccgtggctttcggtatggggatt
aacaaacctaacgttcgttttgtggtgcattttgatatcccgcgtactatcgaatcttac
tatcaggaaactggccgtgccggccgtgatggtttgcccgccgaggcgatgttgctgtat
gacccagctgatatggcgtggttgcgccgttgtctggaagagaaaccggctggtgcgcaa
caagatattgagcggcataaacttaatgcgatgggggcttttgctgaagcgcaaacctgt
cgccgattagtcttgctgaactattttggtgaaggcaaacagcagtcatgcggtaactgt
gatatctgcctcgatccacccaaacgctacgatgggctggccgatgcgcaaaaagcgctg
tcatgtgtgtatcgcgtcgggcagcggtttggtttggggtatatcgtcgaggtgctgcgc
ggggccaataaccagcgtattcgtgaatttggccatgacaaactgtcagtttacggcatt
ggtcgtgaacagagtcatgagcattgggtcagtgttctacgccaactgattcatctcgga
ttattgagtcagaatattgccatgttctccgccttgcagttgaccgaggctgcacgcccg
gtattacgagctgaattgccactacaactggccgtaccgcgaatccagagtttgaaagtg
cgtagcagcgcgaatcaaaaatcctatggcggcaattacgatcgcaaattgttcgccaaa
ttgcgtaaattacgcaaatctatcgccgacgaaggtaatattccgccttatgtggtgttt
aacgatgccaccttgctggagatggcggagcagatgccaattactgccagtgaactgttg
agtgtcaatggcgtcgggcaacgtaagctggagcgctttggcgcgccgtttatggcgatg
atccgcgaccatgttgataacattcatgttgataacaacgttgatgattaa
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