Yersinia enterocolitica subsp. palearctica Y11 (serotype 0 3): Y11_25101
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Entry
Y11_25101 CDS
T02010
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yey
Yersinia enterocolitica subsp. palearctica Y11 (serotype:0:3)
Pathway
yey02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yey00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Y11_25101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yey03021
]
Y11_25101
Transcription machinery [BR:
yey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Y11_25101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CBY25671
UniProt:
A0A0H3NMQ0
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Position
2549474..2551312
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AA seq
612 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDDDDEDEDDEEEEDDNSIDPELARQKFSELREQYENARLEIKKNGRS
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFASNETSDTWFAAAIAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcccct
gatgccgatgatttaatgctggccgagaacaccactgataccgacgatgacgcggctgaa
gctgctgcacaggtgttgtccagtgttgaatccgaaatcgggcgtacaaccgacccggtg
cgtatgtacatgcgtgaaatgggtaccgttgagctattgacgcgtgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggtccagtgctcagtggctgaataccct
gaagcgattacttacctattggagcaatatgatcgcgttgaggcgggcgaagctcgtcta
tctgacttgatcaccggctttgttgacccaaacgccgaagaagatattgcgccgactgca
actcacgttggttctgaattatccactgaagaaatggatgatgacgacgatgaagatgaa
gacgacgaagaagaagaagacgataacagcatcgatccagagctggcacgccagaaattc
agtgaattgcgtgagcagtacgaaaacgcacgtttggaaatcaagaagaatggtcgtagc
cacgccaacgctgctgctgagattctgaaactttctgaagtgttcaaacagttccgcctg
gtaccgaagcagttcgactatctggtcaacaacatgcgtgccatgatggaccgcgttcgt
acccaagaacgtatcatcatgaaactgtgtgttgaacagtgcaaaatgccgaagaaaaac
ttcgttaccctgtttgccagcaatgaaaccagcgatacctggtttgcagctgcaattgct
atgggtaaaccatggtctgaaaaactgaaagatgtttcggacgatgtgcaacgtagcttg
caaaaactacgtcagatcgaagaagaaaccggcctgaccattgagcaagtgaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgcgccaagaaagaaatggttgag
gctaacctgcgtctggttatctctattgcgaaaaaatacaccaaccgtggcttgcagttc
cttgatttaattcaggaaggcaatatcggtttgatgaaagcagtagataaattcgaatac
cgccgtggttataagttctcaacctatgcaacctggtggattcgtcaggctatcacccgc
tctatcgcggaccaggcacgtactatccgtattccggtgcatatgattgagactattaac
aaactcaaccgtatttcgcgccagatgctgcaagagatgggccgcgagccaacgccggaa
gagttggctgaacgcatgctgatgccggaagacaaaatccgtaaagtattgaagattgcg
aaagagccaatctcaatggaaaccccaatcggtgatgatgaagattcacatctgggcgat
ttcattgaagataccactctggagctgccgctggactctgccacctctgagagcctgcgt
tctgccactcacgacgtgttagctggcctgaccgcgcgtgaagcgaaagttctacgtatg
cgtttcggtatcgatatgaacactgaccacactctggaagaagtgggcaaacagtttgac
gtcacccgtgaacgtatccgtcagatcgaagctaaggcactgcgtaaactgcgtcaccca
agccgctctgaagtgctgcgcagcttccttgacgattaa
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