Yersinia enterocolitica subsp. palearctica Y11 (serotype 0 3): Y11_33641
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Entry
Y11_33641 CDS
T02010
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
yey
Yersinia enterocolitica subsp. palearctica Y11 (serotype:0:3)
Pathway
yey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y11_33641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yey03019
]
Y11_33641
Enzymes [BR:
yey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Y11_33641
Messenger RNA biogenesis [BR:
yey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Y11_33641
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
CBY29166
UniProt:
A0A0H3NZ65
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All DBs
Position
complement(3479422..3480708)
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AA seq
428 aa
AA seq
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MSKTHLTEQKFSDFALHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAP
RNNRKRPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgctagtt
attgaagcccttgaaaacaaagggtttcagtattgcacgccgatccaggcgttagcattg
ccactcaccctctctgggcgtgatgtagcgggtcaggcgcaaacaggaaccggcaagacg
ctggcattcttagcgtctactttccattatttgctttctcaccccgcagaagagggtcgt
cagactaatcaaccgcgcgcattgattatggcaccaacgcgtgaattagctgtgcaaatt
cactccgatgcagagtcactttcccaggtaaccggcctgaaattaggtttggcttatggt
ggtgacggctacgacaaacagcttaaagtgctggaaagtggcgtagatattcttatcggg
actactggccgtttaatcgattacgcaaaacaaaattatataaatctcggtgcgattcag
gttgtggtattggatgaggctgatcggatgtacgatttaggctttattaaagatatccgc
tggctgttccgccgtatgccttccgttgataagcgtttaaacatgctgttctctgccaca
ctttcgtaccgcgtacgtgaattggctttcgaacaaatgaacaacgccgaatatgttgaa
gtggaaccgttacaaaaaaccggccaccgcattcaggaagagctgttctacccttcaaat
gaagaaaaaatgcgtctgcttcagacgttgattgaagaagagtggccagatcgttgcatt
atttttgccaataccaaacatcgttgtgaagaaatctggggccacctggctgccgatggt
catcgtgtcggtctattgaccggtgatgtcgcacagaaaaaacgcctgcggattttagaa
gatttcaccaaaggtgatttggatatcctggttgcaactgatgttgcggctcgtggtttg
catattccactggtaacccacgtctttaactatgatctgcctgatgattgtgaagactat
gttcaccgcattggccgtaccggtcgtgctggcgaaagtggtcattccattagcctggcc
tgtgaagaatacgcattaaacttaccggctattgagacctataccggccatagcattccg
gtgagtaaatataatagcgatgcactattaactgatttgccggcgccaaaacgtctggcc
cgtacccgcaccgggaatggcccacgtcgtaactctgccccacgtcgcagtggtgcacca
cggaataaccgtaagcgaccgagctga
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