Yersinia enterocolitica subsp. palearctica Y11 (serotype 0 3): Y11_34031
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Entry
Y11_34031 CDS
T02010
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yey
Yersinia enterocolitica subsp. palearctica Y11 (serotype:0:3)
Pathway
yey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y11_34031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yey03019
]
Y11_34031
03400 DNA repair and recombination proteins [BR:
yey03400
]
Y11_34031
Enzymes [BR:
yey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y11_34031
Messenger RNA biogenesis [BR:
yey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Y11_34031
DNA repair and recombination proteins [BR:
yey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Y11_34031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
CBY29127
UniProt:
A0A0H3NUX0
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All DBs
Position
3523041..3524891
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AA seq
616 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIAL
TATADEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQSCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLG
LLSQNIAMFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAM
IRDHVDNIHVDNNVDD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaatagggagttactggcagagcaggtattgcgagatact
ttcggctaccagcaattccggcccggacaacaagaaattatcaacgccactctatcaggg
caagattgtctggtagtgatgccaacgggcggcggtaaatccttgtgttatcagatcccg
gcactggtgacggatggcttaacgctggtggtctcccccttaatttctttgatgaaagat
caggttgaccaactgctggcctatggtgtgggcgcggggtgcttaaactcatcacaaaca
cgcgagcagcaattggcggtgatggacggctgccgcagcggtcagattaagctgctgtac
atcgcacctgaacggctggtgatggagagctttcttgatcaactgcaccagtggcgtcct
gcgctgttggcggtggatgaagcacactgtatctctcaatggggccatgatttccgcccg
gaataccgtgcccttggtcagttaaagcagcgtttccctaatttaccggtgatagcattg
accgcgacggctgatgaagccacgcgcggcgatatcgtgcggttactcaatctggatcag
ccattaattcaggtcagcagctttgatcgcccgaatattcgttacaccctggttgagaag
ttcaaaccgcttgatcaactatggcgttttgttcaagaccagcgtggcaaaagtggcatt
atttactgcaatagccgggctaaggtagaagacaccaccgcgcgcctacaaagccgtggc
ttaagtgtggcggcttaccatgccgggctggacaatgagcgccgcgcacaggtgcaggaa
gcttttcagcgcgatgatttgcaagtggtggtcgccaccgtggctttcggtatggggatt
aacaaacctaacgttcgttttgtggtgcattttgatatcccgcgtactatcgaatcttac
tatcaggaaactggccgtgccggccgtgatggtttgcccgccgaggcgatgttgctgtat
gaccccgctgatatggcgtggttgcgccgttgtctggaagagaaaccggctggtgcgcaa
caagatattgagcggcataaacttaatgcgatgggggcttttgctgaagcgcaaacctgc
cgccgattagtcttgctgaactattttggtgaaggcaaacagcagtcatgcggtaactgt
gatatctgcctcgacccaccgaagcgctacgatgggctggccgatgcgcaaaaagcgctg
tcttgtgtctatcgcgtcgggcagcggtttggtttgggctatatcgtcgaggtgctgcgc
ggggccaataaccagcgtattcgtgaatttggccatgacaaactgtctgtttacggcatt
ggtcgtgaacagagtcatgagcattgggtcagtgtcctacgccaactgattcatctcgga
ttactgagtcagaatattgccatgttctctgccttgcagttgacagaggctgcacgcccg
gtattacgtgctgaattgccgctacaactggcagtgccgcgaatccagagtttgaaagtg
cgtagcagcgctaatcaaaaatcctatggcggcaattacgatcgcaaattgttcgccaaa
ttgcgtaaattacgcaaatctatcgccgacgaaggcaatattccgccttatgtcgtgttt
aacgatgccaccttgctggagatggcggagcagatgccaattactgccagtgaactgctg
agtgtcaatggcgtcgggcaacgcaagctggagcgctttggcgcgccgtttatggcgatg
atccgcgaccatgtagataacattcatgttgataacaacgttgatgattaa
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