Yersinia fenwicki: ACF3VQ_20040
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Entry
ACF3VQ_20040 CDS
T11829
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yfe Yersinia fenwicki
Pathway
yfe03420
Nucleotide excision repair
yfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACF3VQ_20040 (uvrD)
03430 Mismatch repair
ACF3VQ_20040 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yfe03400
]
ACF3VQ_20040 (uvrD)
Enzymes [BR:
yfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACF3VQ_20040 (uvrD)
DNA repair and recombination proteins [BR:
yfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACF3VQ_20040 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ACF3VQ_20040 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
DUF4391
Motif
Other DBs
NCBI-ProteinID:
XIA59450
LinkDB
All DBs
Position
complement(4421468..4423630)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQL
RLLKRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGDR
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSNILTAANTLIANN
DGRMGKNLWTDGAQGEPISLYCAFNELDEARFVVNRIKAWQDNGGALNDCAILYRSNAQS
RVLEEALLQTAMPYRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVIRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRFAELVDSLAHETADMPLHVQ
TDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAAL
EAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECVEEVRLRATVSRPVNHRRMG
TPMNENDSGFSLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFPGEGIKWLVAAYARLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgacagcctaaatgaaaaacaacgtgaagccgtggccgcg
ccacgctgcaacctgttggtactggccggtgcgggcagtggcaaaacacgggtgctggtt
catcgtattgcctggctgttgtcggtagaaaatgcttctccgtattcgattatcgcggtc
acctttaccaataaagcggcggccgaaatgcgccaccgtattgagcatttgattggtacc
agtcagggcggcatgtggattggcactttccacgggttggcgcaccggttgctgcgtgct
caccatatggatgccaatctgccgcaagatttccaaatcctcgacagcgacgaccaactg
cggttattgaaacgcttggttaaggccttgaatttagatgaaaaacaatggcctccacgt
caggcaatgtggtacatcaacggcaaaaaagacgaaggtctacgtccgcagcatattgag
agctacggtaacccggttgaagccacttggttgcgtatctatcaggcctatcaggaagcc
tgtgaccgcgcgggcctggtggattttgccgaactattattgcgtgcgcatgagctgtgg
ctgaataagccgcacattctgaatcactatcgcgagcgctttaccaacattctggtggat
gagttccaggataccaacaacattcaatatgcctggattcgcctattggcaggagatcgc
tccaatgtgatgattgtcggcgacgatgaccagtcaatttatggctggcgcggggcacag
gtggagaatatccagcgcttcctgaaggatttccctggcgctgaaaccatccgattggag
cagaattatcgctcaaccagcaatattctgacggcggcaaacaccctgattgccaataat
gatggccgcatgggtaagaacttgtggactgacggggcgcaaggcgagcctatctcgctc
tattgtgcttttaacgagttggatgaagctcggtttgtggtgaatcgcatcaaagcctgg
caagacaacggcggtgcgctgaatgattgcgccatcttgtatcgtagtaacgcccaatcg
cgtgttttggaagaggccttgttacaaacggcgatgccgtaccgtatttatggtggtcag
cgcttcttcgaacgtcaggaaattaaagacgcactggcttatctgcgcctgatttccaat
cgtaacgatgatgctgcttttgagcgggtggtgaatacgccgactcgtgggattggtgat
cgtacattagatgttattcgccaaaccgcgcgtgaccgccagttaaccttgtggcagtca
acccgtgccatgttgcaggaaaaagtgctggcgggccgcgcggcttctgcgctacaacgt
tttgccgaactggtggattcactggcgcatgaaacagctgatatgccgctgcatgtccaa
actgatcgtgtgattcgcgattctggcttgtggtcgatgtatgagcaggaaaagggcgag
aaaggtcaggcgcgtgttgaaaaccttgaagaactggtcaacgcgactcgccaatacagc
tatcaggatgaagatcaggatctgatgccactgcaggcatttctttctcatgcggcgctg
gaggctggtgaggggcaagcagatgcctatcaagatgcggttcaactgatgactctccat
tcagcaaaagggctggagttcccgcaggtatttatcgtgggtatggaagagggcatgttc
ccgagtcagatgtcactggatgaaggtgggcgtttggaagaggagcggcggctggcctat
gttggggtcacccgggcgatgcagaagctgacactctgttatgccgagagccgtcgtctg
tatggcaaagaagtgaatcatcggccatcacgttttatcggcgaattgccgcaagaatgt
gtcgaagaagtgcggctacgcgcgacagtctctcgcccggtaaaccaccgtagaatgggg
acgccaatgaacgaaaatgacagcggcttctcgctgggccagcgggtgcgacatcctaag
tttggtgaaggcactatcgtcaatttggaaggcagcggtgagcacagtcgattgcaagta
gccttccctggtgaagggattaagtggttggtagcggcttatgcacggctggaagccgtc
taa
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