Yersinia frederiksenii: AW19_139
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Entry
AW19_139 CDS
T03606
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03420
Nucleotide excision repair
yfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AW19_139
03430 Mismatch repair
AW19_139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yfr03400
]
AW19_139
Enzymes [BR:
yfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AW19_139
DNA repair and recombination proteins [BR:
yfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AW19_139
MMR (mismatch excision repair)
Other MMR factors
AW19_139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJI85774
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All DBs
Position
132866..134815
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AA seq
649 aa
AA seq
DB search
MTNSQILDGNDRDAGVVEEICGYLTDIPPRNYFLFAGAGSGKTRTLVEVLRRLTGVTEHE
KGGQLARSLKMYGRSIRVVTYTKNAVSVINGRLGDNNLVSVSTIHSFCWELINGFNDDIR
EALIALKEAQLARDTAEAEAKPRGITPAKQRALDEIIDEIEILRATEVFIYHPDRNMYGP
GALPHNYVLDATAWLLRNKPTLQSILKDRHPIILIDESQDTMKGVLDSLMILAKKRERDL
TLGLLGDHRQRIYMDGHADLPSIVPENWATPELQMNHRSQRRIVTLINKIWETELEGRTQ
PVKGSAQHPRTEKAGGTVRLFLGDTSRSPEDKVLSERWCAERMFEVSCSVAWNQEQYQVL
ALEHKLVATRGSFLEVYEAMTLLDPHAAAPSGSGDNKGPSTVQILLNELGHLEACVSNEG
IVNEFKATEVFRRYGGLDNMPEDSEARAERTDEMLEAIAIFAMACANPESTVAEVLAPVL
NAKLFEVDHRLQEAYADKSPAPQAPGRGEDESKQTRMRRGWCALFAAPWKQLKCYRNYLA
GISELATHQVVKGSEFKHVMVVMDDALAGGTLIKYDKIFGGTELSPKDKKNAEAGKETTI
DRTLRLLYVTCSRAQESLALVLWSSNPATAMARIKESQWFAEYEILIIP
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgactaactcacagatccttgacggcaatgatcgcgatgcaggggtagtagaagagatt
tgtggctaccttacagacataccacctcgtaactacttcctttttgcaggggctggttct
ggtaaaacacgaacattggttgaagttttacgtcgccttactggtgtgaccgagcatgag
aaggggggacaattagcacggtccctgaagatgtatgggcgttcgattagagttgtgacc
tacaccaaaaatgctgtctctgtaatcaacggacgtcttggggacaataatttagtcagt
gtatctaccatccattcgttttgctgggaattgattaacgggtttaacgatgacatccgt
gaggctcttattgcattaaaagaagcgcaacttgctagagacactgcagaggcggaagca
aaaccgagaggtataactccagctaaacaacgcgctctcgacgaaattatagatgaaatc
gaaattctgcgagcgacagaagtattcatataccatcccgaccgtaatatgtatggtcct
ggtgctctaccacacaattacgtactggacgcgactgcgtggttgcttcggaataaaccg
acacttcaaagcattctcaaagatcgacatccaatcatacttattgatgagtcgcaggac
acgatgaaaggtgtactggactccttgatgatacttgccaaaaagcgggagagagatttg
actcttggtctgctgggagatcatcgacaacgaatttatatggatggtcatgccgatctt
ccaagcattgttccggaaaactgggcaacgcctgagttacaaatgaatcatcgtagtcag
cgacggattgttacactgattaataaaatctgggaaactgaactggaaggcaggacgcaa
ccagtaaagggttcagcacaacatccccgaacagaaaaagctggtggaacggttcgactc
ttcttgggggatacatcacgaagtccagaagataaagtgcttagcgaacgctggtgtgct
gagcggatgtttgaagttagttgttcagtagcttggaatcaagagcaatatcaggtgctt
gcgcttgaacataagctcgtcgccactcgcggttcgtttcttgaggtgtatgaggcaatg
accctactggatccccacgccgcagctccatcaggcagtggggacaataaggggccttca
acagtacaaattttgcttaatgagcttgggcatttagaagcctgcgtgagtaatgaagga
attgtgaatgagttcaaggcaaccgaagtttttagacgttatggcggtttagacaatatg
ccagaggactctgaagcaagagctgaacgtactgatgaaatgctcgaggcgatagcgata
tttgcaatggcttgtgccaaccctgagtcaacggtcgctgaggtattggcaccagtctta
aatgcaaaattatttgaagtagatcatcgccttcaggaggcttatgccgacaagtcacca
gccccgcaagctcctggacgaggtgaggatgagtcaaagcaaacaagaatgcgccgtgga
tggtgtgcactgtttgctgctccatggaaacaacttaagtgctatcggaattaccttgct
gggatttcagagctcgcaacacatcaggtagttaaaggctctgagttcaagcacgtcatg
gttgtaatggatgatgctcttgctggtgggactctcattaagtacgacaagatttttggt
ggtacggagttaagtccaaaagataaaaagaatgcagaggcaggtaaggagacaaccatc
gaccggactttacgtttgctgtacgtgacttgtagcagggcgcaagaatcgcttgcctta
gttctttggtcgtccaatccagctactgctatggctcgaatcaaggagagtcagtggttt
gctgaatatgagatactgataatcccatag
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