Yersinia frederiksenii: AW19_1594
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Entry
AW19_1594 CDS
T03606
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW19_1594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yfr03019
]
AW19_1594
03009 Ribosome biogenesis [BR:
yfr03009
]
AW19_1594
Enzymes [BR:
yfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AW19_1594
Messenger RNA biogenesis [BR:
yfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AW19_1594
Ribosome biogenesis [BR:
yfr03009
]
Prokaryotic type
rRNA processing factors
AW19_1594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJI87662
LinkDB
All DBs
Position
1704771..1708229
Genome browser
AA seq
1152 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPTLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
ESAPTATPVKPTVAPQKTAAAVEQPGFFSRLLSGLKGIFGTSEEEIKPVEVEKTENSENR
RNDRRNPRRQNNNRRDRGDRTPREGRDNSNRDNSSRDNSSRDNNGRDNANRDNSNREGRE
DQRRNKRPTQQTTAPLAQTEVVEADKAPREEQPQRRGDRQRRRQDDKRQAPQDVKAKVDD
IDVITAAVEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNVLETPITAPVAQVAAP
VVHEEVKLLTQTSPQTDDDATNDRNANNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPT
QSAMPLAGAFASPEMASGKVWVRYPVAQQVEQAFVENPVEEQLPVERVQEVAAVETSIAI
AAAPVVVAPVIVAPVITAPVVATAVAEIAVPTPQHKPGGSSSSAAAVPGRAPVVVETKIV
ETTIAETAVIEPATVEATVESRAIEEPVQVTEIATEAETITATEPVVEEVAATETAVEKT
IEPEAVVVETVVVETVVEEAVVEEITEPEAIAAETVTEEAAVEEVNVTEEAVVAPVAVAA
PQPVVAHPEGVLFKHYASAPMTKAPAPDYVPASPTQGQWERPAFDFAGKGPAGGHAAVTQ
ATAPATKPQSVE
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgccactcagcaagaagagttgcgtgtcgcccttgtagat
ggacagcggctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaagggaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattac
ggcgctgaacgacatggttttctcccattaaaagaaatctctcgcgaatatttccctagt
aattattcctctcatggccgcccaaacatcaaagatgtgctgcgcgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggtaataaaggtgccgcactcacgactttcatc
agcctggcgggtagttatttagttttgatgccaaacaacccacgtgccgggggtatttct
cgccgtatcgagggtgatgaccgcactgaattgaaagaagccctatcctccctgcaattg
cctgacggcatgggcctgattgttcgcaccgccggtgtcggtaaatctgctgatgcgctg
caatgggacttatcattccgtctgaagcattgggatgcgattaaaaaagccgctgaaggt
cgccctgcgcccttcctgatccatcaggaaagtaacgtgattgtccgtgctttccgtgat
tatctgcgcccggacatcggcgaaatcctgatcgataaccctaaagttctcgaactggct
aaagagcatatcgccgcactcggtcgcccggatttcagcagcaaaattaaattgtatagt
ggtgagattccattattcagtcactaccaaattgagtcacagattgaatctgccttccaa
cgcgaagtgcgtctgccttccggtggttcgattgttattgacactaccgaagcgctgact
gcgattgatatcaactccgcgcgagcaacgcgtggtggtgatatcgaagaaaccgcattc
aataccaaccttgaagctgccgatgagattgctcgccaattacgtctacgcgacttgggt
ggcctgattgtcatcgactttatcgatatgacaccggtacgccaccagcgtgaagtggaa
aaccgtttgcgcgatgccgtccgtcaggatcgtgcgcgtatccagattggccgcatctcc
cgctttggtttactggaaatgtcccgtcagcgcctcagcccgtcactgggtgagtcaagc
caccatgtgtgcccacgctgtagcggtaccggtactgtacgtgacaatgaatccctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagaaaatactcatgaagttcac
gcgattgtaccggtacaaattgcgtcgtatctgttgaacgaaaaacgtgaatccgtcaat
gctatcgaaaaacgccagggcggtgtacgtgcagtgatcgtgccaaacgatcaaatgcaa
acgccgcattactcggtgcttcgcgtacgcaaaggcgaagaagtcccgactctcagctat
ttgttgccacaactgcatgaagcagaaatggcgcaaccgctggaagaagcgactattgag
cgtaaacgtccggaacaaccggcgttggcaactttctctctgccaactgaagtgccgcca
gaatcagcccctacagctacgccggttaagccaactgttgcaccacaaaaaactgctgcg
gcggttgaacaacctggtttcttcagccgtctgctcagtggcctgaaaggtatattcggc
acatcagaagaagaaattaaaccggtcgaagttgaaaaaacggaaaacagtgaaaatcgt
cgcaatgatcgccgtaatcctcgtcgccagaataataaccgtagagatcgcggtgaccgc
acaccacgtgaaggtcgcgataactcaaaccgtgataactcaagccgtgataactcaagc
cgtgataataatggccgtgacaatgctaaccgcgataatagcaatcgcgagggccgtgaa
gatcaacgccgcaataaacgcccaacacaacagacaactgcgccattagcgcaaactgaa
gttgtagaagcggataaagcaccgcgtgaagagcagccacagcgccgcggtgatcgccag
cgtcgccgtcaggatgacaaacgccaggcaccacaggacgttaaagctaaagttgatgac
attgatgtcattactgcggctgtagaagaagtacaacctgagcaagaagaacgccaacag
gtgatgcagcgccgtcaacgccgccaattgaatcagaaagtccgtattcaatccgcgaat
gatgagctgaatgttctggaaacgccgatcaccgccccggttgctcaggttgctgcacca
gtagtgcacgaagaagtgaaattactgacacagaccagccctcagaccgatgatgatgca
acgaacgaccgcaatgccaacaatgaaaatggcatgccacgtcgctctcgccgctcgcct
cgccacctgcgtgtcagcggtcaacgccgtcgtcgctaccgtgatgagcgctatccaaca
caatctgctatgccgctggcaggtgctttcgcctcaccagaaatggcgtcgggtaaagtg
tgggtgcgttatccggttgcccagcaggttgaacaagcctttgtggaaaacccggttgaa
gagcaattgccagtagaacgcgtgcaagaagttgcagctgtagaaacgtcaatcgctatt
gctgccgcaccagttgttgttgctccagtgattgttgctccagtgattactgctccagtt
gttgccactgccgtagctgaaattgccgtaccgacgccacaacataagccgggggggtca
tcctcatccgccgctgccgtacctggccgtgcacctgtggtcgtggaaacaaaaattgta
gaaacgacaattgcagaaacagcagttattgagccagcaacagtagaagccactgttgaa
agccgcgcgattgaagaacctgttcaggttactgaaatagcaacagaagctgaaactatc
acggcaactgagccagtggttgaagaagtggctgcaacagaaacagcagttgaaaaaaca
atcgagccagaagcggttgttgtagaaactgttgttgtggaaactgtggttgaagaagct
gtggttgaagaaataaccgagccagaagcgattgctgcggaaactgtaactgaagaggct
gcagttgaagaggtcaatgtgacagaagaggccgttgtagcgcctgttgccgtggcagca
ccacagccggttgtcgctcatcctgaaggtgtgctatttaagcactatgcttcagcaccg
atgactaaagcacctgcgcctgattacgtcccagcatcaccaactcaaggccaatgggag
cgcccagcctttgatttcgcaggaaaaggtcctgcgggtggccatgctgctgttactcag
gccacggcaccggcaacaaaaccacaatcggtcgaataa
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