Yersinia frederiksenii: AW19_2251
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Entry
AW19_2251 CDS
T03606
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03030
DNA replication
yfr03430
Mismatch repair
yfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AW19_2251 (dnaE)
03430 Mismatch repair
AW19_2251 (dnaE)
03440 Homologous recombination
AW19_2251 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yfr03032
]
AW19_2251 (dnaE)
03400 DNA repair and recombination proteins [BR:
yfr03400
]
AW19_2251 (dnaE)
Enzymes [BR:
yfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AW19_2251 (dnaE)
DNA replication proteins [BR:
yfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AW19_2251 (dnaE)
DNA repair and recombination proteins [BR:
yfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AW19_2251 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AJI88071
LinkDB
All DBs
Position
complement(2423846..2427328)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGA
GVKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDW
LIKHKEGLILLSGGRMGDVGKFILRGNQAQVDLCLEFYQEHFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFINESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFM
RDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVEKSKQGL
EERLEFLFPDPEVRVQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPEEM
AKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDENEIVYGIGAIKG
VGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLGPHRAALMS
SLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDGERETLGLY
LTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIASRVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLRFGATWRVTPTD
RLLIDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttgtccacctgcgtgttcacagcgattactccatgatcgatgga
ttagccaagattggacccttggtgaagagagctgctgccctaggcatgcccgctctggcc
attaccgactttaccaacctatgtggcttggtaaaattctacggtagcgctcatggtgct
ggggttaaacccatcatcggcgcagacttctacgtgcaaagtgaaattctaggtgatgaa
ttagctcacctcactgttctggcacgtaataatgaaggttatcaaaaccttaccttgctt
atctctgaagcttatcaacgcggatatggtgccgctggccctatcattgaccgtgattgg
ctgattaagcacaaagaaggcctgattctgctgtctggtggccggatgggggatgttggc
aagttcattctgcggggtaatcaggctcaggttgatttgtgccttgaattttatcaagag
catttccctgacagctactatctggagttaattcggactggccgcccggatgaagaaaac
tatctgcatgccgctgtagcattagcaaccgagcgtggcttgccggtagtcgcgactaat
gatgtgcgttttatcaatgaatctgactttgacgcccatgagatccgcgtggctatccat
gacggctttacattggttgaccctaagcggcctaagaattatagccctcagcaatttatg
cgcgatgaagagcaaatgtgtgagcttttcgcggatattcctgaggcgctgattaacagt
gttgaaatagccaaacgttgtaatgtgactatccggcttggtgagtatttcctaccgcaa
ttccccaccggcgatatgagcacagaagactttctggttgaaaagtctaaacagggttta
gaggagcggctggaattcctattcccagatcctgaagttagggtacaaaaacgccctgaa
tatgatgaacgtctggaaattgaactaaaagtcattaaccagatgggttttcctggttac
ttcttgattgtaatggagtttatccagtggtcaaaagataacggcgtgccggtagggccg
gggcgtggttctggtgcgggttctttggtggcttatgcgctgaagattactgaccttgat
ccgctggaatttgacctgctgttcgaacgttttctaaaccccgaacgtgtatcaatgccc
gacttcgacgttgacttctgcatggaaaaacgcgatctggtcattgagcatgtggctgaa
atgtatggccgtgatgctgtttctcagataattacctttggtaccatggcagccaaagcg
gtcattcgcgatgtgggccgagtcttgggccatccttatggcttcgttgaccgaatctca
aagttagtcccgcctgatccgggcatgacgctagagaaagcattcgctgcggaaccgcaa
ctgcctgaaatctatgaggcagatgaagaggttagagcgctaattgatatggcgcgcaag
ttggaaggggtaacgcgtaacgccggtaaacatgccggtggggtagttattgcaccaaca
aaaattaccgattttgccccgctatactgcgatgcagaaggcaataacccggttacgcaa
ttcgataagaatgatgtggaatatgccgggttggtaaagttcgacttcctaggtttgcga
acacttactatcattaactgggcattggagatgatcaatgcccggcgtgcgaaaaccggg
ttagagccgattgatattgcctctattccactggatgataaaaaaagcttcgatatgctg
caacgttctgaaacgacggcggtattccagcttgaatccagaggcatgaaagatcttatc
aagcgcctaaaacctgactgcttcgaagatatgatcgcgttggtggcattattccgcccc
ggcccattgcaatcagggatggttgataacttcattgaccgtaaacacggccgtgaagca
atatcctatcctgatattgaatggcagcatgaatcactaaaaccagttcttgagccaacc
tatggcatcattttatatcaagaacaggttatgcagattgctcaggttctgtctggttat
tcactcggcggcgcggatatgttgcggcgtgcgatgggtaagaagaacccagaggagatg
gcgaaacagcgctctatatttgaagatggtgcgaaaagccagggggtcgagggtgaactg
gcgattaagatttttgacctggtagagaaatttgctggttacggttttaacaagtcacac
tccgccgcctatgctttggtttcttaccaaactttgtggttgaaagcccattatcctgcg
gagtttatggcggcggtaatgaccgccgatatggacaacaccgataaggtggtgggcctg
gtcgatgagtgctggcgcatggggctgaaaattctgccacctgatatcaatagcggcctg
tatcatttccatgtcaatgatgaaaatgaaattgtttatggtatcggcgcaattaaaggt
gtcggcgaggggccgattgaggcgatgctggaggcccgcaaagaaggcggctacttcaaa
gagctgtttgatttatgtgccagagttgatactaaaaaacttaatcgccggattttagaa
aaacttattatgtccggtgcctttgaccgtttggggccgcaccgcgctgcattaatgagt
tcgctgggtgaagcattaaaagccgcagaccaacatgctaaggcagaagccattggtcag
gttgatatgtttggtgtattagcagatgctcctgagcaggttgagcaatcttatgctaat
gtgccgccgtggcaggaacagattgttttagacggtgagcgggaaacgttggggctgtac
ctgaccggccacccaatcacccaatatcttaaggaaatagagcgttatgccggcgggctg
cgtttgaaagatatgcacccgacggatcggggcaaaatgactatggctgcggggttggtt
atcgcttctagggttatggtgacaaaacgcggaaatcgtattggcatttgtacattggac
gaccgttctgggcgtcttgaagtcatgctattcaccgatgcgttggaaaaatatcagcat
ttgttggaaaaagaccgtatcctgatagccaccggacaggtcagctttgatgactttagt
ggtggacttaaaatgaccgcccgtgagttaatggacatcagtgaagctcgtgaaaaatat
gcccgtgggcttgctatatcgctgaccgacaggcaaattgatgaccagcttttgaaccgt
ctccgtcagtcgttggaaccccatcgagcggggacgatcccagtgcatctttattaccaa
cgggaagatgctcgcgcccggctgcggtttggagccacatggcgcgtgacgcccaccgat
cgcttattgatagatttgcgaacgttggtaggtaatgagcaggtggaactggaatttgac
taa
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