Yersinia frederiksenii: AW19_2999
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Entry
AW19_2999 CDS
T03606
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW19_2999 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yfr03019
]
AW19_2999 (recQ)
03400 DNA repair and recombination proteins [BR:
yfr03400
]
AW19_2999 (recQ)
Enzymes [BR:
yfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AW19_2999 (recQ)
Messenger RNA biogenesis [BR:
yfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AW19_2999 (recQ)
DNA repair and recombination proteins [BR:
yfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AW19_2999 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJI86771
LinkDB
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Position
complement(3254530..3256362)
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAQQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIAL
TATADEATRGDIVRLLNLEQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPTGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQPCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLG
LLSQNIAMFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDTTLLEMAEQMPITASELLSVSGVGQRKLERFGAPFMAM
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgccgcagtgataaatagggagttactggcacagcaagtattgcgagatact
ttcggctaccagcaatttcggcccggacaacaagaaattatcaatgccaccctatcaggg
caagactgtctggtagtgatgccaacgggcggtggtaaatctttgtgctatcagataccg
gcattggtgacggatggcctaacgttggtggtctcccccttaatctctctgatgaaagac
caggttgaccaactgctggcctatggtgtgggcgcggggtgcttaaactcatcacaaact
cgtgagcagcaattggcggtgatggacgggtgccgcagtggtcaaattaaactgctgtat
atcgcaccggaacggctggtgatggagagttttctcgaccaactacatcagtggcgtcct
gcgctgttggcggtggatgaggcgcactgcatctctcaatggggccatgatttccgcccg
gaataccgtgcccttggtcagttaaagcaacgtttccctgatttaccggtaatagcgctg
accgcgacggctgatgaagccacgcgcggtgatatcgtgcggctgcttaatctggagcag
cccttaattcaggtcagcagttttgaccgccccaatattcgctacaccttggtagagaag
ttcaaaccccttgatcaactgtggcgctttgttcaagaccagcgcggcaaaagtggcatt
atttactgcaacagtcgggcaaaagtggaagacaccaccgcgcgcctacaaagccgtggt
ttaagtgtggcggcttaccatgcggggttggataatgagcgccgggcgcatgtgcaggaa
gctttccagcgcgatgacttgcaagtggtggtcgccaccgtggctttcggtatggggatt
aacaaacccaacgtccgctttgtggtgcattttgatattccgcgcactattgaatcttac
tatcaggaaactggccgtgccgggcgtgatggcctgcccgccgaggcaatgttgctgtat
gacccggccgatatggcgtggttacgccgttgtctggaagagaaaccgaccggcgcacaa
caagatattgagcggcataaactcaatgcgatgggggcttttgccgaagcacaaacctgc
cgccgattggtgttgctgaactattttggtgagggcaagcagcagccatgcggtaactgc
gatatttgtttggatccgccaaagcgctatgatgggctggctgatgcgcaaaaagcgctg
tcttgtgtgtatcgggtcgggcaacggtttggtttgggctatatcgtcgaggtgctgcgc
ggggcaaataatcagcgcattcgtgagtttggtcatgacaaactgtcggtctatggcatt
ggtcgcgagcaaagccatgagcactgggtcagtgtgttgcgccagctaattcaccttggg
ttactgagccaaaatatcgcgatgttctctgctttgcagttgaccgaggccgcgcgtccg
gtattacgtgctgaattgccattacaattggcggtgccgcgtattcagagtttgaaagtg
cgcagcagtgctaatcaaaaatcctacggcggcaattacgatcgcaaattattcgccaaa
ttgcgtaaattgcgcaaatctatcgccgacgaaggcaatattccgccttatgtggtgttt
aacgacaccaccttgttggagatggcggagcagatgccgatcacggccagtgagctgttg
agtgtcagtggcgtcgggcaacgtaagttggagcgctttggcgcgccgtttatggcgatg
atccgcgaccacgtagataacaacgacgactaa
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