Yersinia frederiksenii: AW19_3200
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Entry
AW19_3200 CDS
T03606
Symbol
gmr
Name
(GenBank) cyclic di-GMP phosphodiesterase Gmr
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AW19_3200 (gmr)
Enzymes [BR:
yfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
AW19_3200 (gmr)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
RIP
Motif
Other DBs
NCBI-ProteinID:
AJI85421
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All DBs
Position
3455510..3457504
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AA seq
664 aa
AA seq
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MFENQDTSILNAYFGTHSPFWRLAFDSQALELSAVKGTTNIAISLNLVQTMRIRSLTGIT
ASLDIEIEIYGHPLHLHLVGRKINKKEWGGTASAYADTESVARDLVIGLSFAEQVVSEAN
SVIVILDKDGCVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASSRKNIEGFFQRGA
SYEAERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILANTDM
ITGLPNRHAIHERINSAIQTRVDTSVGIIYLDLDNFKKVNDHYGHMFGDRLLKDVSQAIL
SCLGDNEMLARLGGDEFIVLVENATINLLETTAQRILNRMKSPFRIGLIEVYTGCSIGLA
LCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKVSEYVWLDTNLRKGLEQHQ
LHVYYQPKISTKTGKVHSVEALVRWLSPERGLIAPLEFISYAEESGLIRPLGKWVLQTSM
QQAVDWRKRGINLRVAVNVSARQLIDEAIVTSFIESLEASELESSLVDVELTESCLIDNE
DAAINIIKQLRYLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHIDTNPISQSLV
RAIIVVAEALKMQVIAEGVETKEEEEFLDSIGIDEKQGFLYAKPMPADELEHWLITQHPH
LSLD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaccaagacacgtcgatcctcaatgcttactttggtactcatagcccattt
tggcggcttgcttttgatagccaagctttagagttatctgcagttaaagggacaacaaat
atcgcaatatcccttaatttagtccaaacaatgagaatccggagcttaaccggaattact
gcaagtttagatattgaaattgaaatttatggtcacccccttcatctacatcttgtcggc
cgcaagattaataagaaagaatggggaggtactgcctcagcctatgctgatactgaatct
gtagctcgtgacttggtcataggtctttcctttgcagagcaggtcgtttctgaagctaat
tcagtgattgttattcttgataaagatgggtgcgtacaacgatttaaccaccttagcgaa
gaatataccggtaagaaagagcaagatgttattggtaaaaacgtctatgacttatttatg
acagccaaggaaggggcgtcgtcacggaaaaatattgagggattctttcagcgtggtgca
tcttatgaagcagagcgttgggttaacaccgttaaaggaaagcgcctatttttattccgc
aataagtttgttcatagtggtagcggtaaaaatgagcgctatctcatctgctctggcact
gatattaccaaagagagacgcgctcaagaacgccttaggattctggccaataccgatatg
attactggtttacctaatcgccatgctattcatgaacgcataaacagcgcaatccaaacc
cgtgttgacacctctgtaggtattatttatctcgatctcgataacttcaaaaaagtgaat
gaccattacggccatatgtttggtgatcggttactgaaggatgtttctcaggctatttta
agttgcctgggtgacaacgaaatgcttgcccggttaggaggtgatgagtttattgttttg
gtcgaaaacgctacgataaacttgcttgaaacaactgcacagagaattctcaaccgtatg
aaatcgcctttccggattggattgatcgaggtatataccggctgttcaattggtcttgca
ctatgccctgagcatggcgacacattggaaaatattattcgcagcgcagataccgctatg
tataccgcaaaagaacatggaaaacagacctattcaattttctcgcagcaaatgaataaa
aaagtatccgaatatgtttggctcgataccaatttacgcaagggtttagaacagcaccaa
ttacatgtctattaccagccaaaaatatcaaccaaaacaggaaaagtgcacagtgtagaa
gcactcgtcagatggttatcgcctgaacgaggtttgattgctcctctggaatttatctcc
tatgccgaagaatccggacttatcaggcccctgggtaaatgggtactgcaaacatcgatg
caacaagccgtcgattggagaaaacgcgggattaacctacgagttgccgtcaatgtttct
gctcgacaattgatagatgaggctatcgttaccagctttattgaatctctcgaagccagc
gaactggaatctagcttggtcgatgttgaattaacggaaagttgcttaattgataatgaa
gacgccgctatcaatataattaaacagctacgctacttaggtgctcaagttcacttagat
gattttggtactggttattcttcactctctcagttagcgcgcatccctattgatgccatt
aagctggatcaaagttttgttcgccatattgatactaatcctatttcacaatctctggta
cgagccattatcgttgtcgccgaagcacttaaaatgcaagtgatcgccgaaggggtagaa
actaaagaggaagaagaatttctggattctattggcattgatgaaaaacagggatttctt
tatgctaaaccaatgcccgcagatgaactggagcattggctgataacacaacaccctcac
ctttcactggattag
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