Yersinia frederiksenii: AW19_3228
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Entry
AW19_3228 CDS
T03606
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03030
DNA replication
yfr03410
Base excision repair
yfr03420
Nucleotide excision repair
yfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AW19_3228 (polA)
03410 Base excision repair
AW19_3228 (polA)
03420 Nucleotide excision repair
AW19_3228 (polA)
03440 Homologous recombination
AW19_3228 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yfr03032
]
AW19_3228 (polA)
03400 DNA repair and recombination proteins [BR:
yfr03400
]
AW19_3228 (polA)
Enzymes [BR:
yfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AW19_3228 (polA)
DNA replication proteins [BR:
yfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AW19_3228 (polA)
DNA repair and recombination proteins [BR:
yfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AW19_3228 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AW19_3228 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Prok-E2_E
HHH_5
DUF2529
Obc1_cap
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AJI86724
LinkDB
All DBs
Position
complement(3489214..3492012)
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT
LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISSLTFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELKVTAPDDDQLHQLFSRYEFKRWLADVEAGKWLEGK
KDRPTGQSSNKVFVAAESAPAVEVTAVLSQENYQTILDEKSLSDWIERLRNSEVFAFDTE
TDGLDTLSSNLIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVLAQLKPLLEDEKALKV
GQNLKFDQSMLARYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIA
GKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL
SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLP
ILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHL
SQDQGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAFGLARQL
NIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRK
AAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESA
EQKIRELMEQSMQLAVPLKVDVGVGDNWDQAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaatccattgatcctcgttgacggttcctcttacctctatcgt
gcttaccatgctttcccgccgctgaccaacggcagcggtgagccaacgggcgcgatgtat
ggcgtgttgaacatgttgcgcagtttgttgctgcaatatcgtccaagccatgtcgctgta
gtttttgatgctaaaggtaaaacattccgcgatgagcttttcgctgaatataagtctcac
cgaccccctatgccggatgatttacgcgctcaaattgagccacttcaccaaatggttaag
gctatgggattacctttattggtcgtttccggcgttgaggctgacgatgttattggcact
ttggcacaagaagctgaaaaagcaggtcatgctgtattaattagtactggtgataaagat
atggcgcaattagttacgccgaatatcactctcatcaatacaatgaataacgctatttta
gggccacaggaggtatgtgagaaatatggcgttccccctgagctgattattgattttctc
gccctgatgggggattcctcagataatattcctggagtgccgggtgttggtgagaaaact
gcacaggctttattacaaggtctgggtggtctggatgcgctattcagtaatttggataaa
atatcctcgctgacatttcgtggtgcaaaaacgatgtcggccaaattggagcagaataaa
gatgttgcctatctctcctataaattagccacgattaaaacggatgttgaactggatgtg
acttgtgatgagctgaaagtcacggctcctgatgatgatcagctacatcaattatttagc
cgctatgaatttaagcgctggctggcggatgttgaagcagggaaatggctggagggtaaa
aaagatcggccaacagggcagagcagcaataaagtttttgtcgcagcagaatcagctcct
gcggttgaagttaccgcggtgctctcacaagaaaattatcaaactatcttggatgagaaa
tctttaagcgactggattgaacggcttagaaactcggaggtttttgcgtttgatactgaa
actgacggccttgatacccttagcagtaatttaattggtttttcttttgccgtggcaccg
ggtgaagccgcttatttgcctgtagctcatgattatctggacgcccctacccagcttgat
agaaattgggttctggcccagcttaaacctttactggaagatgaaaaggccctgaaagtc
gggcagaatcttaagtttgaccaaagcatgctggcgcgttatgacattgatctgcgtggt
attgctttcgataccatgttggaatcttatgttttagacagtgttgctggccgacatgat
atggatagcttggcggagcgctatctcaatcataagaccattacctttgaagaaattgct
ggcaaaggcaaaaatcagctcacttttaaccaaattgcgttagagcaagctgggccttat
gcggcagaagatgctgatgtcaccttacagttgcatttagtcttgtggccaaaattgcag
caaagtgaggggcttaagcgagtattccaagaaattgagatgccgctgttaccaatattg
tcccgcattgagcggactggtgtattgattgaccaaaatatattggcggcacactccaaa
gaactgactattcgccttgatgaattggaaaaacaagcacatgaattggctgaagagcca
ttcaatctcgcctcaccgaagcagcttcaggccattttgtatgaaaaacaaaaattgccg
atcttgaagaaaacaccaggaggcgcggcttcaaccaatgaagaggtgctggctgagttg
gcactggattaccctctgccgaaggtgattcttgagtatcgcggcttggcgaaactgaaa
agcacttataccgataaattgccgttgatgattaacccggtttctgggcgagttcatact
tcttatcatcaggctgtcacggcgactgggcgtttatcttcccgtgatcctaacctgcaa
aacattccggtgcgaaatgaagaagggcgtcgtatacgtcaggcttttattgcgccaaag
ggttaccgcatcatggcggctgactactcacagattgagttgcgcatcatggcccatttg
tcgcaagaccaaggattactgactgcatttgctgctgggaaggatatccaccgcgcgact
gcggctgaagtctttggtttgccattggaaaaagtcacaaacgaccaacgccgcagtgct
aaagccattaactttggtctgatttatggcatgagcgcattcggtttagcgcgacagctg
aatattcctcgtggggaagcgcagcgctatatggatctctattttgagcgctaccctggt
gtgctggaatatatggaacgcacgcgcaagcaagccgctgaacaaggttatgttacgacg
ctggatggccgccgcctctatctacctgatattcactcacgcaatgccacgcgccgtaag
gcggccgagcgtgaagctatcaatgcgccgatgcaaggcactgccgctgatattattaag
cgcgcaatgattgcagtggatgcttggttgcagcaagaacctgagcctttggtgcgggtt
atcatgcaagtacacgatgaattggtgtttgaggtgcatgaaagtgtattggaaagcgct
gagcagaaaattcgtgagctgatggaacagagtatgcaattggccgtgccattaaaagtg
gatgtcggtgtgggtgataactgggatcaagcgcactaa
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