Yersinia frederiksenii: AW19_3818
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Entry
AW19_3818 CDS
T03606
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW19_3818 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yfr03019
]
AW19_3818 (deaD)
03009 Ribosome biogenesis [BR:
yfr03009
]
AW19_3818 (deaD)
Enzymes [BR:
yfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AW19_3818 (deaD)
Messenger RNA biogenesis [BR:
yfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AW19_3818 (deaD)
Ribosome biogenesis [BR:
yfr03009
]
Prokaryotic type
rRNA helicases
AW19_3818 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AJI89228
LinkDB
All DBs
Position
4111430..4113409
Genome browser
AA seq
659 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPTLKAPQVLVLAPTRELAIQVAQALTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR
FLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NVERTMKLTIPEVQLPNAEVLGERRLAKFADKVSKQLESSDLDMYRALLAKMQPEEGFDI
EILAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRNDSRREPRSDNRDGG
ERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE
LPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGGERRGGAGRSAGGE
RREGAGAPPRRSFGSDRAPAGGGEQRRGNRDGQRSAAPAPRRDDAAAPAAPARRRFGDA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttcc
gctctgactgatcttggttatgaaaaaccatctcctattcagttggaatgtattccacac
ctgttgaacggccgtgatgttctcggcatggcacaaaccggtagtggtaaaacagccgca
tttggtctgccgctgttgcacaacattgacccaacattgaaagcgccacaggtactggtg
ttagcaccgacccgtgagttggctattcaggttgcacaggcactgaccgatttttcaaaa
cacatgaacggcgttaacgtggtggccctgtacggcggtcagcgttatgacgttcaatta
cgcgctttgcgccaagggccacaagttgttgtcggcaccccaggtcgtctgttagaccac
ctgaaacgcggtactcttaacctatccaacctgagcggtttagtgttggatgaagcagat
gaaatgctgcgtatgggctttatcgaagacgtcgaaactatcatggcgcagatcccagca
gaacatcagactgcactgttctctgctaccatgccagaagcgattcgtcgtatcacccgt
cgctttatgaaagagccacaggaagtccgcattcagtctagcgtgacgacccgccctgac
attagccagagtttctggagagttggtggtggttataacaagaaagaagcattggttcgt
ttcttggaatctgaagatttcgatgcagccatcatcttcgtgcgtactaaaaatgcgacg
ctggaagttgcagaagctctggaacgtagtggttacaacagcgctgcattgaacggcgac
atgaaccaggcgctgcgtgagcagacactggatcgcctgaaagatggccgtctggatatc
ctgattgcgactgatgttgctgctcgtgggctggatgttgaacgtatcagcttggttgta
aactatgatatccctatggattcagagtcttatgttcaccgtatcggccgtactggtcgt
gcgggtcgtgcaggccgcgcgttactgttcgtcgagaaccgtgaacgtcgtctgttacag
aacgttgaacgtaccatgaagctgactatccctgaagtccaattgccaaacgcagaagta
ctgggcgaacgtcgcttagccaaatttgcggataaagtcagcaaacagttggaaagcagt
gatttggatatgtaccgtgcgttgctggctaagatgcaaccagaagaagggtttgatatt
gaaattctggctgctgcactgctgaaaatggcacagggcgaacgtcctttgatcctgcca
ccggaagcaccgcgtcgtccacagcgtgaattcaattctcgcgatgaccgtggtagtgat
cgcggccgtgatcgtaatgacagccgtcgtgaacctcgctctgacaaccgtgacggtggc
gagcgtccagcacgtcgcgaacgtcgtgatgttggtgagatggaactgtaccgcattgaa
gtgggtcgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggt
gatatcagcagccgttatatcggcaacatcaagctgtttgcttcgcattcaactatcgag
ctgccaaaaggcatgccgggcgaaatgttatctcacttcacccgtacccgtatcctgaac
aagccgctgaacatgcagctgttgggtgatgcacagccgcatgagcgccgtgagcgccca
gcgggtggtaacggtggtggtgagcgccgtggtggtgctggccgttcagccggtggcgaa
cgtcgtgaaggcgcaggtgctcctcctcgtcgttcattcggcagcgaccgtgctccagct
ggtggtggcgaacaacgtcgtggcaatcgtgatggtcagcgctcagctgcaccagcacca
cgtcgcgatgatgccgcagcgccagccgcacccgctcgccgtcgtttcggtgatgcataa
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