Yersinia frederiksenii: AW19_3979
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Entry
AW19_3979 CDS
T03606
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
yfr
Yersinia frederiksenii
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yfr03021
]
AW19_3979 (rapA)
Transcription machinery [BR:
yfr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AW19_3979 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJI85643
LinkDB
All DBs
Position
complement(4309700..4312606)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMITLLFPATGENRLYARNDSPITRVMFNPGDT
ITHHEGWQLKVEEVSEENGLITYIGTRLDTEETGVSMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLSGRAERILIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSESLL
DSTNPFETEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAENIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELINEQDIEPLLKAANSQTEDSEAARQELVTMLMDRHGTSRILFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMSAKKTLEARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLTANRSEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLENTAQAVLVRWYHEGLDAFEHTCPTGRTIYDSGYQELITYLATPNEQ
EGLDEFIHACRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAQIIADQDNDVNLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPQDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDKNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHAMLQQAEALIEEQAR
LLIEAAKHEADDKLSTELSRLEALKAVNPNIRDDEIETLEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaacttggattgggt
accgtcgttgccattgacgtacgcatgatcaccttactgtttcccgccaccggtgaaaac
cgcctttacgccagaaatgactcgccaattacccgtgtcatgttcaatccgggtgatacc
atcactcaccacgaaggctggcagctgaaagtggaagaggtgtctgaggagaatgggctg
attacctatatcggcacccgcctggataccgaagaaaccggcgtttctatgcgtgaagtg
ttgctcgatagcaaactgacttttagcaaaccgcaggataggttatttgctggacaaatc
gatcgtatggatcgattcgcgctgcgtttccgcgcccgtaaatatcaaagtgagcagttc
cgcttgccgtggagtggcctgcgcggcatccgcgccagcctgatcccgcaccaattacat
attgcttatgaagtgggccagcgccatgcaccgcgtgtattgctggctgatgaagtcggc
ttgggtaaaaccatcgaagccgggatgattatccaccagcaactgctgtcaggccgtgct
gaacgcatcctgattgtggtgccagaaagcttgcaacatcagtggttggtcgaaatgctg
cgccgcttcaatctgcgcttctcgctgtttgatgacagccgctattccgaatctttgctc
gacagcaccaatccgtttgaaactgaacaaatggtcatttgctcactggattttgtgcgc
cgtaataaacagcgtctggaacagctggcggatgcctcttgggatttgctggtggtggat
gaagcacaccatctggcctggagtgaagaagccccaagccgcgaatatcaagttattgaa
cagctggccgagaatatccccggcgtgttgctgttgaccgccaccccagagcaattaggc
caacaaagtcactttgcccgtttgcgcttgcttgatcccgaccgcttccacgattacgaa
gaattcgttaatgagcagcaaaaataccgtccaatcgccgatgcagtgacattgctgctg
ggcggtgagcgcttaactgatgacaagctgaatctgctcggtgagctgattaatgagcag
gatattgaaccgctgctgaaagcagcaaacagtcaaactgaagacagcgaagccgcgcgc
caagagctggtgaccatgctgatggacagacacggcaccagccgtatcttgttccgcaac
acccgcaatggggtgaaaggcttcccacaccgtgttttgcatcagattaagctgccgctg
ccgacccaataccaaacagccattaaagtctctggcattatgtcggcgaagaaaaccctg
gaagcacgcgccaaagacatgctttacccagaacaaatctaccaagagtttgagggcgaa
aatgccacttggtggaactttgatccgcgagttgaatggctgcttaactacctgacagcg
aatcgcagtgagaaagtgctggttatctgcgcccaagccgccaccgccttgcagcttgag
caagtattgcgcgagcgcgaagctatccgcgcagccgtattccatgaaggtttgtcactg
attgaacgcgaccgtgcggcggcctattttgcttctgaagaagatggcgcgcaggtattg
ctgtgttcagaaatcggctccgaagggcgcaacttccagttcgcttgccaattggtgatg
ttcgatttgccttttaacccggacttgctcgaacaacgtattggccgcctggacaggatt
ggtcaaaaccgtgaaattcaaatcatggtgccttatctggaaaatactgcgcaagcggtg
ctggtgcgctggtatcacgaaggtttggatgctttcgagcacacctgcccgaccggtcgc
accatttatgacagtggctatcaggaattgattacctatctggcgacgccgaatgagcag
gaaggtttggatgaatttatccacgcctgccgccagcagcacgaaggcctgaagctccaa
ttggaacagggtcgtgaccgcctgctagaaatgcactccaacggcggcgaacatgggcaa
gaactggcgcaaatcattgccgaccaagacaatgacgtcaatttagtcagtttcgccctg
aatctgtttgatattgttgggattaaccaagaagatcgcagcgacaatttgattgtgctg
accccctctgaccacatgctggtgccggacttcccagggctgccgcaagatggctgcaca
gtgacattcgatcgcgaacaggcgttatcgcgtgaagatgctcagtttgtcagctgggag
cacccgatcatccgtaacggcttggatctgatcttatccggcgacaccggcagttgtgca
gtttctttgttgaaaaacaaagcattgccggtcggtactctgctcgcggagttggtctat
gtggtcgaagcacaagcgccaaaacacttgcaactgactcgcttcttaccgccgacgccg
gtgcggatgctgatggacaaaaatggtaccaatttggccgcgcaggttgaatttgaaagc
tttaatcgccaactaaatgccgtcaatcgccatacctccagcaaattggtcaatgcggtt
cagcaagaagttcatgcaatgttgcagcaagcagaagccctgattgaagaacaggcgcgt
ttactgattgaagcggctaaacatgaagcggatgacaaactgagcactgaactttcacgt
ctggaagccctaaaagcggttaaccccaatattcgtgatgacgaaatagagactctggaa
cataaccgtaaaatggtgctggaaaacctgaatcaggcgggctggcgtttggatgctatt
cgtttagtcgtggtgacgcaccagtaa
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