Yersinia frederiksenii: AW19_4060
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Entry
AW19_4060 CDS
T03606
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW19_4060 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yfr03019
]
AW19_4060 (pcnB)
Enzymes [BR:
yfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
AW19_4060 (pcnB)
Messenger RNA biogenesis [BR:
yfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AW19_4060 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AJI86380
LinkDB
All DBs
Position
complement(4412697..4414019)
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AA seq
440 aa
AA seq
DB search
MTIIPRDQHNISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSAT
PEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGML
LRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYRED
PVRMLRAVRFAAKLDMTISSETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLK
LCEYQLFQPLFPLIARHFTEHHDSPMERILVQVLKNTDYRLHNDKRVNPAFLFAAMLWYP
LIEHAQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQG
KRAHKLMEHPKFRAAYDLLALRAEVENNHELQRLTQWWGEFQEATPLQQKNMLNTLGADP
APRRSRPRRPRKPAPRNEGA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacgattattccacgagatcagcacaatatttcccgtagagatatcagcgataatgcg
ctgaaggttctctatcgcctgaataaatcaggttacgaagcctatctggttggcggcggt
gtccgtgacctattgttgggcaaaaaaccaaaagattttgatatcaccaccagcgccacg
ccagaacaagtgcgaaagttattccgcaactgccgcctggtcggtcgccgtttccgtctg
gcccatgtcatgtttggcccggaaattattgaagtcgccactttccgtggtcaccacgaa
cagcagcaagcggaagacagcgacaaaaactcttctcagcaagcacaaaatggcatgctg
ttgcgcgacaatattttcggcaccattgaagatgacgcccagcgccgagacttcacgatt
aatagcctctattacggcatttctgattttgcgctacgcgactacaccggcggtttgcgt
gatctgaaagaaggtattattcgcctgattggcgatcctgaaacccgctatcgtgaagat
ccggtgcggatgctgcgggcagttcgttttgccgctaaactggatatgacgatcagctcg
gaaactgcggagccgatcccgcgcctggcctcgctgctgcacgagatcccacccgcgcgt
ctgtttgaagagtcactcaaactactgcaatccggctacggctataaaacttatttaaaa
ctgtgtgaatatcagcttttccagccgttattcccactgattgcccgccattttaccgag
catcatgactcgccgatggaacgtattttggttcaggttctgaaaaatactgactatcgt
ttgcataatgataagcgcgtcaatccagcattcttatttgccgctatgctttggtatccg
ctgattgaacatgcgcagaagctgacgcaagaaagtggtctggcctattacgatgctttc
gcactggcaatgaatgatgtattggatgaagagtgccgttcactggcaattccaaaacgt
ataacttcattggtgcgagatatctggttgctgcaactgcggctgtcacgccgtcagggt
aaacgtgcgcataagctgatggagcatccaaagttccgtgcagcttacgacttgctggca
ctgcgtgctgaagtcgaaaataaccatgaattacagcgtcttacacagtggtggggagaa
ttccaggaagccacaccgctacagcaaaaaaatatgctgaatactttaggggccgatccg
gcaccgcgtcgctctcgtcctcgccgcccacgtaagccagcaccacgtaacgaaggggca
taa
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