Yersinia frederiksenii: AW19_560
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Entry
AW19_560 CDS
T03606
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AW19_560 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yfr03400
]
AW19_560 (uvrB)
DNA repair and recombination proteins [BR:
yfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AW19_560 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AW19_560 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_30
DUF87
SBDS_domain_II
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJI88174
LinkDB
All DBs
Position
579036..581048
Genome browser
AA seq
670 aa
AA seq
DB search
MSKLFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLSELQ
YSRNDQVFQRGTFRVRGEVIDIFPAESDEWAVRVELFDEEVERLSIFDPLTGQLQHEVPR
FTVYPKTHYVTPRERILQAMEDIKIELAERRQVLLANNKLVEEQRITQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITASMEKAIGETQRRRAKQQTYNEERGIIPQGLNKKVGDILQLG
QPSLRGKGKGRGGKVADTHDYQSLAPKALDQKIRELEVKMYTHAQNLEFEQAAELRDQVH
QLRQQFIAIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattattcaaactacattctgagtttaagccagcgggtgatcagcctgaggcc
atccgtaaactggaggaggggttggaaaatggtctggcccatcagacgctgttgggggtg
acggggtcgggcaaaacctttacggttgccaatgttattgctgatttgaatcggcccact
atggtattagcgcccaacaaaaccttggcggcacagctttatggcgagatgaaagagttt
ttccccgataatgcggtggaatatttcgtctcctactatgactattatcagcccgaagcc
tatgtcccaagctctgatacctttattgagaaagatgcctcggtaaacgagcatattgag
caaatgcggctgtcagcgactaaagccctgctggagcgacgcgatgtggtggtggtggcc
tcggtctccgccatttatggtttgggtgatcccgacttatacctgaaaatgatgctgcat
ttaaccaagggcatgataattgatcagcgcgcaattttacggcgcttgtcagaattgcaa
tatagccgcaatgaccaagtgtttcagcgcggaactttccgggtgcgtggcgaggttatt
gacatcttcccagcggaatctgatgagtgggcggtgcgggttgaattatttgatgaagaa
gttgagcgactgtccatttttgatccgctcaccggccaactacagcatgaagttccccgt
tttactgtctatcctaaaacgcactacgttaccccgagggagcgtattttacaggcgatg
gaagacatcaaaattgagctagctgagcggcgtcaggtgttattagccaacaataaattg
gttgaagaacagcggattacacagcgaactcagtttgatctcgaaatgatgaatgaactg
ggctactgctccggcattgaaaactattcccgctatctttctggtcgtggcccgggtgaa
gcgccgccaaccctctttgattacctcccggcggatggtttgctgattgtggatgaatcc
cacgttaccatcccgcaaatcggcggcatgtacaaaggtgaccgttcgcggaaagaaacc
ttggtggaatatggcttccggctgccatcggcgctggataaccgcccaatgcgctttgaa
gagtttgaggcgctggcgccgcaaaccatttatgtctctgccactcccggcaaatacgaa
ctggagaaatccggtggcgatattattgaacaggtggtgcgcccaaccggcttgctcgat
ccattgattgaagtgcgcccggtggcaacacaagtggatgatttgctgtcagagatccgc
atccgcgcggcgattaatgagcgggtactggtgaccacgctgactaagcggatggccgaa
gacttaacggagtatctggtagaacatggtgcgcgggtgcgttacttgcattcggatatt
gacaccgttgagcgcgtagagattattcgcgatttgcgtctgggcgagtttgatgtgctg
gtggggatcaacttactgcgagaagggctggatatgccggaggtttctcttgtcgctatc
cttgatgctgataaagaggggttcctgcgctccgagcgctccttaatccagaccattggc
cgtgcagcacgtaacctcaatggtaaagcaattctttatggtgacagaattacggcctcg
atggaaaaagccattggtgaaacgcagcgccgccgggctaagcagcaaacttacaatgaa
gagcgcggcattattccacagggacttaacaagaaggtcggcgatattttgcaattgggc
caaccttcactgcgcggtaaagggaaagggcggggcggtaaagtggctgatacccacgat
taccaatctctggcaccgaaagcgcttgaccaaaaaatccgggagttggaagtgaaaatg
tacacacacgcgcaaaatctggagttcgaacaggcggcagaattacgcgatcaagtacac
cagttgcgccagcaattcatcgctatatcttaa
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