Yersinia hibernica CFS1934: D5F51_00895
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Entry
D5F51_00895 CDS
T05961
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
yhi
Yersinia hibernica CFS1934
Pathway
yhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5F51_00895 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yhi03021
]
D5F51_00895 (rho)
03019 Messenger RNA biogenesis [BR:
yhi03019
]
D5F51_00895 (rho)
Transcription machinery [BR:
yhi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D5F51_00895 (rho)
Messenger RNA biogenesis [BR:
yhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D5F51_00895 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QAX77256
UniProt:
A0ABX5QVW3
LinkDB
All DBs
Position
195194..196453
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGTRKEELLTTTEELQKMWILRRILHPMGEIDAMEFLISKLATAKTNDQFFDNMRRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaacacgccggtttctgatctgataacacttggcgaaaat
atggggctggaaaacctggcccggatgcgtaaacaagatattattttctctatccttaag
cagcatgcgaaaagtggagaagatatcttcggtgacggtgtgttggagatattgcaggat
gggtttggtttcctccgttctgcagacagctcctacctcgccggccctgacgacatctac
gtatccccaagccaaattcgccgttttaacctccgcacaggtgataccgttgccggtaag
attcgtccacctaaagaaggtgagcgctactttgcattgttgaaagttaacgaagttaac
tatgacaaaccggaaaacgcccgtaacaaaatcctattcgaaaacttaacgccattacat
gccaactctcgtctgcgcatggagcgtggtaatggttcgactgaggatttaactgcccgt
gtacttgatttggcatcgccaatcggtcgtggccagcgtgggctgattgttgctccgcca
aaagcgggtaaaactatgctgttgcagaatattgctaccagcattgcttacaatcaccct
gattgtgtattgatggtattgctgattgacgaacgtccagaagaagtcaccgaaatgcaa
cgtttggtgaaaggtgaagttatcgcttccactttcgacgagccagcatctcgccacgtt
caagtcgctgaaatggttatcgagaaagcgaaacgtctggttgagcataaaaaagacgtt
atcattttactggattcgattacccgtctggcccgcgcctacaacaccgtggtaccggct
tcaggtaaagttctgaccggtggtgtggatgctaacgccctgcatcgtccgaagcgtttc
tttggggctgcacgtaatgttgaagagggcggtagcctgaccatcattgccacggcattg
gttgataccggttctaaaatggatgaagttatctatgaggaatttaaaggtaccggcaac
atggaactgcatctgtcgcgcaaaattgcagagaaacgggtgttcccagccattgatttc
aaccgctcaggtacacgtaaagaagagctgctgacgaccacggaagagctgcaaaaaatg
tggatcttgcgtcgtattcttcatccaatgggtgaaatcgatgcaatggagttcctcatc
agcaaattggcaacagcaaaaaccaacgatcagttcttcgataacatgagacgttcgtag
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