Yersinia hibernica CFS1934: D5F51_04500
Help
Entry
D5F51_04500 CDS
T05961
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
yhi
Yersinia hibernica CFS1934
Brite
KEGG Orthology (KO) [BR:
yhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yhi03019
]
D5F51_04500 (hrpB)
Enzymes [BR:
yhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D5F51_04500 (hrpB)
Messenger RNA biogenesis [BR:
yhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D5F51_04500 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
AAA_22
ResIII
DUF2934
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QAX81076
LinkDB
All DBs
Position
929237..931759
Genome browser
AA seq
840 aa
AA seq
DB search
MLQWLMMKVERMGKNVVVSWKESDAARGALPVSEVLDALLAALQTSPQVLLHAPTGAGKS
TWLPLQILQRGGLSGRIIMLEPRRLAAKNVAYRLAQQLGEQPGQTVGYRMRAESKSGPDT
RLEVVTEGILTRMLQQDAELSGISLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI
MSATLDNQRLSALLPSAPAIVSAGRSFPVERSYQPLSSHERLEDGVAHRVKRLLNEQSGS
LLLFLPGVAEIHRVMERLQGEVANDTDLCPLYGALPLSEQQKAIQPAPAGRRKVVLATNI
AETSLTIEGIRLVVDSGLERVARFDVKNGLTRLVTQRISQASMVQRAGRAGRLAPGICWH
LFAKEQAERAAQYSEPEILNSDLCSLWLELLHWGCQEAGQLNWLDKPPRAALAAARDLLR
NLGAIDSPGQLTGMGRMMASLGCEPRLAAMLCFAAGQSPDALATAALLAAILEEPPRSGQ
IDLHDWLSRPQPHWQRRARQLTSRINARVGAIDSDIAGQLLALAYPDRIAQQRGQDGRYL
LANGMGAAMAQDEALARAPWLVAASLLQSNSGPDARILLALPIDIDQLAQQSPRLVEEKT
VVEWDEEKGTLRAWRRWQIGRLTLRAQPLAKPSDEALQSALLNWVREQGLQVLSWDEQAE
QLRTRLHCASRWLPEEPWPATDDDSLLSQLELWLLPSLPGVRDLRGLRQVNMAEALTRLL
SWQLRQRLDTELPTHYTVPTGSRLPIRYAVERPPVLAVRLQEVFGEQHSPMLASGRVAVV
LELLSPAQRPLQITGDLAAFWQGAYREVQKEMKGRYPKHVWPDDPANTRPTRRTKKYQDK
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgttacaatggctgatgatgaaagtagagaggatggggaagaatgtggtggtgagttgg
aaagaaagtgatgctgcgaggggcgctttgcccgtaagtgaagtgcttgatgcgcttttg
gccgcgctgcaaacctcaccgcaagttctgctccatgcccccaccggggccggtaaatcg
acttggctgccgctgcaaatcctgcaacgggggggcttgtctggccgcattatcatgttg
gaaccccgccggttggcggcaaaaaatgtggcttatcgcttggcgcaacaattgggtgaa
caaccgggccagaccgtgggttatcggatgcgcgccgaaagtaaaagcgggccagatacc
cggctagaagtggtcactgagggcattctcacgcgaatgctccaacaagatgcggagctg
agcgggatatcgttggtcatcctcgatgaattccatgaacgtagcttgcaggccgatttg
gcgctggcgctgttgttggatgtgcagcaagggctacgcgatgacctgaaactgctaata
atgtccgcgaccctggataaccagcgcctttctgccttattgccatccgccccggcaata
gtttccgcggggcgcagttttcctgtcgagcgcagctatcagcctctatcgagccatgaa
cggctggaggatggggttgcccatcgcgttaagcgcttattaaacgaacaatcgggttct
ttgctgctatttttacccggcgtagcagagattcaccgcgttatggagcggttgcaaggt
gaagttgccaatgacactgacctttgcccactgtatggcgctctgccactcagtgagcag
cagaaagccattcagcccgctccggctgggcggcgcaaagtggtgctggcgaccaatatt
gccgaaaccagtttgacgattgaaggtattcggctggtagtggatagcggattggagcgg
gtggcgcgttttgatgtcaaaaacggcctcacccgattggtcactcagcgcatcagtcaa
gcttcgatggtgcagcgcgccgggcgtgctgggcgattggctccggggatttgttggcat
ttgtttgctaaagaacaggccgaacgcgcggcgcaatacagtgagccggaaattcttaac
agtgatttatgcagcctgtggctggagctattgcactggggatgtcaggaggcgggccag
ctcaattggcttgataaaccgcctcgagcggcactggccgcggcgcgcgatttattgcgg
aacttaggggcgattgattcaccagggcagcttactggcatggggcgcatgatggccagt
ttaggctgcgaaccgcgtctggccgccatgctgtgttttgccgccggacaaagtccggat
gcattggcgacagcggcgttattggccgcgattctggaagaacccccgcgttcaggccaa
attgatttacatgactggctcagccgcccacagccgcattggcagcggcgggcgcggcaa
ttgacctcaagaattaatgcgcgcgtcggcgccatcgacagtgatatcgcgggccaattg
ttggcattggcttatccggaccgcatcgcccaacaacgtggacaggatgggcgctatctg
ctggccaatggtatgggcgctgccatggcgcaagatgaggcgctagcacgagcaccttgg
ttggtggcggccagtttgttacaaagcaacagtgggccggatgcgcgcattctattggcg
ctgccgattgatattgaccaactggcgcaacaatcgccccgtttggtcgaagaaaaaacc
gtggtggagtgggatgaggaaaagggcacattgcgtgcctggcggcgctggcaaattggg
cggctgacattgcgggcgcagccattagcgaaacccagtgacgaagcattgcaatcggcg
ttgttaaactgggtgcgcgagcaaggtttgcaggtactgagctgggatgagcaggctgaa
cagctgcgcacccgcttacattgtgccagccgttggctccccgaagagccatggccggcc
accgatgatgatagtttactgagccagcttgagctatggctgctaccctcactgcccggt
gtacgggatttgcgtggcttacggcaggtgaatatggcggaggcgttgacgcgtttgttg
agctggcaattacgtcaacggctggatactgagctgccaactcattacactgtgccgact
ggtagccgcctgcccatccgttatgctgttgagaggccgccggtgttggcggtgcgtttg
caggaagtttttggtgagcagcatagcccaatgttggcgagtgggcgggtcgccgtggtg
cttgagctgctttccccagcacagcggccgctacaaattactggcgatttggcggctttc
tggcagggagcttatcgcgaggtacaaaaagagatgaaagggcgctatcccaagcatgtt
tggccggatgatcccgccaatacccggccaactcgtcggactaaaaagtaccaagataag
taa
DBGET
integrated database retrieval system
