Yersinia hibernica CFS1934: D5F51_17130
Help
Entry
D5F51_17130 CDS
T05961
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
yhi
Yersinia hibernica CFS1934
Pathway
yhi03030
DNA replication
yhi03430
Mismatch repair
yhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D5F51_17130
03430 Mismatch repair
D5F51_17130
03440 Homologous recombination
D5F51_17130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yhi03032
]
D5F51_17130
03400 DNA repair and recombination proteins [BR:
yhi03400
]
D5F51_17130
Enzymes [BR:
yhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D5F51_17130
DNA replication proteins [BR:
yhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D5F51_17130
DNA repair and recombination proteins [BR:
yhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D5F51_17130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QAX80111
UniProt:
A0ABX5R3C1
LinkDB
All DBs
Position
complement(3612529..3616011)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDW
LIKHKQGLILLSGGRMGDVGKFILRGNQAQVDLCLEFYQEHFPNSYYLELIRTGRPDEEN
YLHAAVALATGRGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFM
RDEEQMCELFADIPEALTNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVEKSKQGL
EERLELLFPDPDVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKAGLEPIDIASIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEM
AKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLGPHRAALMS
SLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDGERETLGLY
LTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMDISEAREKY
ARGLAISLLDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLRFGATWRVTPTD
RLLIDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttgtccacctacgtgttcacagcgattactccatgatcgatgga
ttagccaagattggacccttggtgaagagagctgccgcgttaggcatgcccgctctggcc
attaccgattttaccaacttgtgtggtttggtaaaattttacggcagcgctcatggtgct
gggatcaaacccatcattggcgcagatttctatgtgcaaagtgaaatcctgggtgatgaa
ttagctcatctgactgttctggcacgtaataatgaaggttatcaaaatcttaccttactg
atatctgaagcttatcaacgcggatatggtgctgctggccctattatcgaccgcgactgg
ttgataaaacataaacaagggctgattctgctatccggtggccgaatgggagatgtgggc
aagtttattctgcggggtaatcaggctcaggttgatttgtgtcttgagttttatcaagag
catttcccgaatagttattatttggagttaattcgtactggtcgcccggatgaagaaaac
tacctgcatgctgcggtggcgctggctaccgggcgcggcttgcccgtggtggcgactaac
gatgtgcgttttattgatgagtcagattttgacgcgcatgagattcgtgttgccatccat
gacggtttcactctggttgatcctaagcggcctaaaaactatagccctcagcagtttatg
cgcgatgaagagcagatgtgtgagctattcgcggatatcccagaggcactgaccaacagt
gttgaaatagcgaaacgttgtaatgtgacgattcggcttggggaatatttcctaccgcaa
ttcccaaccggcgatatgagcactgaagattttctggttgaaaagtctaaacaaggttta
gaagagcggctggagctcctgttccctgacccagatgttcgagcacaaaagcggccggaa
tatgatgagcggctggaaattgaactgaaagtgattaaccagatgggcttccctggttac
ttcttgatagtgatggagtttatccagtggtcaaaagataacggtgtgccggtagggcca
gggcgaggttctggtgctggctctctagtggcttatgcactgaaaattaccgaccttgac
ccgctggagtttgacctgctgtttgagcgttttctaaacccggagcgggtatcaatgccc
gacttcgatgttgacttctgcatggaaaaacgcgacctggtgattgagcacgtcgcggat
atgtatggccgtgatgcggtttcccagataattacttttggtaccatggcggccaaagcc
gttatccgcgatgtaggtcgggtgctgggccacccatatgggtttgtggatcggatttcg
aaattagtcccgccagaccctggaatgacgctggagaaagctttcgctgcggaaccgcaa
ctgcctgaaatctatgaggcagatgaagaggtcagggcgctgattgatatggcgcgcaag
ttggaaggggtaacacgtaacgccggtaagcatgctggtggggtggttattgcgccaacc
aaaattactgattttgcgccactttattgtgatgccgaaggtaataacccggttacccaa
tttgataagaatgacgtggaatatgccgggttagtgaagttcgacttcctcggtttgcga
acactcactatcattaactgggcgttagagatgattaacgcccggcgtgctaaagctggc
ttagagccgattgatattgcctctatcccactggatgataaaaaaagcttcgatatgctg
caacgttctgaaacgacagcggtattccagcttgaatctcgcgggatgaaagaccttatc
aagcgcctgaagcctgactgcttcgaagatatgattgcattggtggcgttgttccgcccc
ggcccattgcaatcagggatggttgataactttattgaccgtaaacatggccgcgaagca
atctcctatcctgatattgaatggcagcatgaatcactaaagccggtgcttgagccaacc
tatggcatcatcttgtaccaagaacaagtgatgcagattgctcaggttctgtctggttat
tcactcggcggtgcggatatgttgcggcgcgcgatgggtaagaaaaacccggcagagatg
gccaaacagcgctctgtatttgaagatggtgccaaaagccaaggggttgacggtgaactg
gcaattaagatttttgacctggtagagaaatttgccggttatggttttaacaagtcacac
tctgctgcatatgctttagtttcttaccaaactttgtggttgaaagcacattatccggct
gaatttatggcggcggtgatgacggccgatatggataacaccgataaagtggtcgggttg
gtcgatgagtgctggcgtatggggctgaaaattctgccccctgatatcaacagcggctta
tatcatttccatgtgaatgatgagggcgaaattgtttatggtatcggtgccatcaaaggt
gtgggtgaggggccgattgaggcgatgctggaagcccgtaaagagggcggctatttcaaa
gagttatttgatttatgtgccagagttgatactaaaaagctcaatcgccggattttagaa
aagctgattatgtccggtgcttttgaccgtctggggccgcaccgcgccgcattgatgagt
tcgttgggcgaagcattaaaggcggcagaccaacatgccaaagcagaagctattggtcag
gttgatatgtttggtgtcttagccgatgcacctgagcaggttgagcaatcttatgctaat
gtgccgccgtggcaggagcagattgttttagacggtgagcgggaaacgctggggctttat
ctgaccggccacccaattacccagtatctgaaggaaatagaacgctatgccggtgggctg
cgtttgaaagatatgcacccgacggatcggggcaaaatgaccatggcggcggggttggtt
atcgcggcaagggtcatggtgacaaaacgcggaaatcgtattggtatttgcacgctagat
gaccgctctgggcgcttggaagtgatgttattcaccgatgcgttggaaaaatatcagcat
ttattagaaaaagaccgtatcctgatagccactggacaggtcagctttgatgactttagt
ggtggacttaaaatgaccgcccgtgagttaatggatatcagtgaagctcgtgaaaaatat
gcccgtgggcttgctatatcgctgctcgacaggcaaattgatgaccagcttttgaaccgt
ctccgtcagtcgttggaaccccatcgagcggggacgatcccagtgcatctttattaccaa
cgggaagatgctcgcgcccggctgcggtttggagccacatggcgcgtgacgcccaccgat
cgcttattgatagatttgcgaacgctggtaggtaatgagcaggtggaactggaatttgac
taa
DBGET
integrated database retrieval system
