Yinghuangia sp. ASG 101: LO772_09995
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Entry
LO772_09995 CDS
T07749
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yia
Yinghuangia sp. ASG 101
Pathway
yia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO772_09995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yia03019
]
LO772_09995
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_09995
Enzymes [BR:
yia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LO772_09995
Messenger RNA biogenesis [BR:
yia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LO772_09995
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LO772_09995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
UGQ13892
LinkDB
All DBs
Position
2425612..2427798
Genome browser
AA seq
728 aa
AA seq
DB search
MDLASTPDPDDDASTPRDSAVPPGATSDLRAEADAVLRGLAGDAARLRADQWRAVEALVA
EERRVLVVQRTGWGKSAVYFVATALLRARGAGPTVIVSPLLALMRNQIDSAARAGIRART
INSANIDDWDAVQAEIAEGGVDVLLVSPERLNNPDFRDTVLPKLAATCGMLVVDEAHCVS
DWGHDFRPDYRRLRTLLGELPRGVPVLATTATANARVTADVAEQLGTGADASNALVLRGS
LDRESLTLGVLRLPDAAHRLAWLDSHLGRLPGSGIIYTLTVAAADEITAYLKSRGHAVAA
YSGRTDDAERRAAEADLLANRVKALVATSALGMGFDKGDLGFVVHVGAPQSPIAYYQQIG
RAGRAVERADVLLLPGREDEAIWRYFASLGFPPEEQVRRTLDVLADAGRPLSTAALEPRV
DLRRNRLELMLKVLDVDGAVRRVRGGWTATGQPWRYDTERYARVSRAREQEQQAMRDYVA
TPGCRLEFLRRQLDDAEAVPCGRCDSCAGPRHDDRVDPGALDAARAALGRPGVPLEPRRM
WPTGMTDAGVPLKGKIPAGEQAETGRALGRLSDIGWGNRLRPLFAAGAQDGPVSDEVFGA
VVDVLATWGWERRPAGVVTIPSRGHGALVGSLGARLAQVGRLPLLGSLAYAPGAEPGLGR
SNSAQRLKALADAFVVPPELAAAVAGLDAPVLLVDDRADSGWTITVAARLLRRAGASGVL
PLVLALEA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggacctcgcctcgacccctgacccggacgacgacgcctcgaccccgcgcgactcggcc
gtgcctcccggcgctacctcggacctgcgcgccgaagcggacgcggtgctgcgcggcctc
gccggtgacgcggcgagactgcgcgcggaccagtggcgggccgtcgaggcgctggtggcc
gaggagcgccgggtcctggtcgtgcagcgcaccggatggggcaagtccgcggtctatttc
gtcgcgacggcgctgctgcgggcccggggggcggggccgaccgtgatcgtctcgccgttg
ctggcgctcatgcgcaatcagatcgattccgcggcccgggcgggcatccgggcccggacg
atcaactcggccaacatcgacgactgggacgcggtccaggccgagatcgccgagggcggt
gtcgacgtcctcctggtcagccccgagcggctcaacaaccccgacttccgcgataccgtg
ctgcccaagctcgccgcgacctgcggaatgctcgtcgtggacgaggcccactgcgtctcc
gactggggccacgacttccgccccgactaccgtcggctgcgcacgctgctcggcgagttg
ccgcgcggtgtcccggtgttggccaccacggcgaccgcgaacgcccgcgtgaccgccgac
gtggccgagcaactgggcaccggggcggacgcgagcaacgcgctcgtgctccgcgggtcg
ctcgaccgcgagagcctcacgctcggtgttctgcggctcccggacgccgcacaccggttg
gcctggctcgactcgcatctgggccggctcccgggctccggcatcatctacacgctcacg
gtcgccgccgccgacgagatcaccgcgtacctgaagtcgcgcggccacgcggtcgcggcc
tactcgggtcgcaccgacgacgccgaacgccgggccgccgaggcggacttgctggccaac
cgcgtcaaggcgctggtcgccacatccgccctgggcatgggcttcgacaagggcgacctg
ggtttcgtcgtgcacgtcggcgccccgcagtcgccgatcgcctactaccagcagatcggc
cgcgcggggcgagccgtggagcgcgccgacgtgctgctgctgccgggccgcgaggacgag
gcgatctggcgctacttcgcgtcgctggggttcccgccggaagaacaggtccgccgcacg
ctcgacgtcctcgccgacgccggccggccgctgtcgaccgcggccctggaaccgcgcgtc
gatctgcgccgcaaccgcctggaactcatgctcaaggtgctcgacgtcgacggcgccgtg
cggcgcgtacgcggcgggtggacggccaccgggcagccctggcggtacgacaccgagcgg
tacgcgcgcgtctcgcgggcccgggagcaggagcagcaggcgatgcgcgactacgtcgcc
acgccgggctgccgactggagttcctgcgccgccagttggacgacgccgaggccgtcccg
tgcgggcgctgcgactcctgtgccgggccgcgccacgacgaccgcgtggatccgggggca
ctcgacgccgcgcgggccgcgttggggcggccgggcgtcccgttggaaccgcgccgcatg
tggccgaccggcatgacggacgcgggcgttccgctcaagggcaagatcccggcgggtgag
caggcggagaccgggcgggctctcgggcggctgtccgacatcggctggggcaatcgcctg
cggcccctgttcgccgcgggcgcccaggacgggccggtctccgacgaggtgttcggcgcg
gtcgtcgacgtgttggcgacgtgggggtgggagcggcggccggcgggcgtcgtcacgatc
ccgtcgcgcgggcacggtgccctcgtcggcagcctcggggcccggctcgcccaggtcggc
cggctcccgctgctcggcagcctcgcgtacgcgccgggtgccgagccgggcctcgggcgc
agcaacagcgcgcagcggttgaaggcgctcgcggacgccttcgtcgtaccgccggagttg
gccgcggctgtggcgggtctcgacgcgccggtgctgctggtggacgaccgggcggacagc
ggctggacgatcacggtggccgcacggctgctgcggcgggcgggggcgagcggcgtcctg
cccctggtcctggccctcgaagcctga
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