Yinghuangia sp. ASG 101: LO772_12875
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Entry
LO772_12875 CDS
T07749
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yia
Yinghuangia sp. ASG 101
Pathway
yia03420
Nucleotide excision repair
yia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LO772_12875
03430 Mismatch repair
LO772_12875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_12875
Enzymes [BR:
yia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LO772_12875
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LO772_12875
MMR (mismatch excision repair)
Other MMR factors
LO772_12875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
UGQ14396
LinkDB
All DBs
Position
complement(3084775..3088398)
Genome browser
AA seq
1207 aa
AA seq
DB search
MRVLSSGASNVAPVRSAHPTLLRDEDDLKRVLKVDYSPEQIAAITAPLEPGVIVAGAGSG
KTTVMTARVVWLVGTGAVRPDAVLGLTFTNKAAGELAERVDRALRHLRPDADVRVDDEEA
GDPTISTYHAFAGRLLTEHGLRIGLEPSARLLADATRFQLAARAARRAPGPFPTLTKTLS
AVIADVLALGGELAEHLVPVERLREFDRALIAEVEAAPKPSAGARAAADAARNRLDLSRL
VSEYADARRRRDLLDFGDQIAYAAQLAEERPEVGETLRDTYKVVLLDEYQDTSVAQRRLL
AGLFGVPEGTAPERAPGRGHPVTAVGDPCQAIYGWRGASVANLDEFPRHFPRRDGSPAPR
FALAENRRSGGRLLAFANELAAPLREMHEGVEALRPGPGADDDGWVRCGLLATQDGEIAW
VADQVQHVIGTRFTPEGDLIGPRDVAVLARTAADFAEIHKALVEREIPVEVVGLSGLLNL
PEVADLVATCEVLDDPTANAALVRLLVGPRWRVGPRDLALLGRRAGELVRFDHGAAEGPD
ARLEQAVAGVDPTEVVSLSDALSDLGDDHPFSTDARIRFARLAAEIRELRRHLGEPLMDV
LHRVLTVTGLEVELSASPGSVAARRRETLHAFLDVAAGFADLDGDPSLTAFLAFLRTAAE
HDKGLDGSLPSARDSVQVLTAHKSKGMEWEVVVVPGLVDGAFPSVQAQAKWTKSGHTLPH
PLRGDAAGLPELADLSAKSFKAFDAAMREHKSTEELRLGYVTFTRPKQLLIASGHWWGRT
RKKPRGPSEFLLRLAEHCEAGDGDILTWAPEPTETDNPHLLGGVEHAWPLPLDAAALEER
RRAARDVIDELVRLEHRARPDTPGPRGPAPSAGTAPVAAVSDPPDVFADDEPPFPDEPPP
DEEELPPPPEDDGGAGGWWDDGPDTAAEVPAARPAADDTAAEHDGAAGADGFGADDPAPP
ADAPGLAPLPDAAEDTDHLGPADRELIESWDQDLDRLVEELLRGRSGVRDVDLPASLSAS
QLLRLASDPDGLARELARPMPRPPAPAARRGTRFHAWIEAQFGERPLLEPDDLPGAADED
ITDEADLVELQQAFLATPYAQRAPYRIEESFQLVLGGRVVRGRIDAVYRDADGRYEVVDW
KTNRSFNADPLQLAVYRLAWAERAGVPPDEVTASFVYVRSGEVVRPRGLPDRAGIERVLS
GKPKTDV
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgttgtcctcaggtgcgtctaacgttgcgccggtgcgatcggctcaccccacc
ctcctccgcgatgaagacgacctcaagcgcgtcctgaaggtcgactactcgcccgagcag
atcgccgccatcaccgcccccctcgaacccggcgtgatcgtcgccggcgccggctccggc
aagaccaccgtgatgacggcccgcgtcgtgtggctcgtcggcaccggcgcggtacggccc
gacgcggtgctcggcctgaccttcaccaacaaggccgccggcgaactggccgagcgcgtc
gaccgcgcgctgcggcacctgcggccggacgccgacgtgcgcgtcgacgacgaggaggcc
ggggatcccacgatctcgacgtaccacgccttcgcgggccgcctgctcaccgagcacggc
ctgcgcatcggcctggagccgtcggcgcggctgctcgccgacgcgacgcgcttccaactc
gccgcccgcgccgcgcgccgcgctcccgggccgttcccgacactgaccaagacgctgtcc
gccgtcattgccgacgtcctcgcgctcggcggcgaactcgccgaacacctcgtgcccgtc
gagcggctgcgggagttcgaccgcgcgctgatcgccgaggtcgaggcggcgccgaagccc
tccgcgggtgccagggccgcggccgacgcggcacgcaaccggctcgacctgtcccggctg
gtgtccgagtacgccgatgcccggcgccggcgcgacctcctcgacttcggcgaccagatc
gcgtacgccgcacaactcgccgaggagcgcccggaggtcggggagacgctgcgcgacacg
tacaaggtcgtgctgctcgacgagtaccaggacacctcggtcgcgcaacgccgcctgctg
gccgggctgttcggcgtccccgaaggcaccgcgcccgagcgggcccccggccgcgggcac
cccgtcaccgcggtcggcgacccgtgccaggcgatctacggctggcgcggcgcgtcggtg
gcgaacctcgacgagttcccccgccacttcccgcgccgcgacggctcgcccgccccccgg
ttcgctctcgccgagaaccgccgcagcggcggacggctgctcgccttcgccaacgaactc
gccgcgccgctgcgcgagatgcacgaaggcgtcgaggcgctgcgcccggggccgggggcc
gacgacgacgggtgggtgcgctgcggtctgctggccacgcaggacggcgagatcgcgtgg
gtcgccgaccaggtgcagcacgtgatcggcacgcgcttcacacccgagggcgacttgatc
gggccgcgcgacgtcgcggtactcgcccggaccgccgccgacttcgccgagatccacaag
gcgctcgtggaacgcgagatcccggtcgaggtggtcgggctcagcggcctgctcaacctg
ccggaggtcgccgacctcgtggcgacctgcgaagtgctcgacgacccgacggcgaacgcc
gcgctcgtccgcctgctcgtcgggccgcgctggcgcgtgggtccgcgcgacctggcgctg
ctggggcggcgggcgggggagctcgtacggttcgaccacggcgcggcggaaggccccgac
gcgcggctggagcaggccgtcgcgggcgtcgaccccacggaagtggtctcgctctccgac
gcgctgtccgacctcggcgacgaccaccccttctccaccgacgcccggatccgcttcgcg
cggctcgccgccgagatccgcgaactccgccgccacctgggcgaacccctcatggacgta
ctgcaccgggtcctcacggtcacgggcctggaggtcgagctgtccgcgtcgcccggctcg
gtcgcggcccggcggcgcgagacgctgcacgcgttcctcgacgtggccgccggtttcgcg
gacctcgacggggacccgtcgctgaccgcctttctcgcgttcctgcggaccgccgccgaa
cacgacaaggggctcgacggaagcctgccgagcgcgcgcgactcggtgcaggtgctgacc
gcgcacaagtccaagggcatggaatgggaggtcgtcgtcgtccccggcctggtcgacgga
gcgttcccgagcgtgcaggcacaggcgaagtggaccaagagcggccacaccctcccgcat
ccgctgcgcggcgacgccgccggcctgcccgagttggccgacctgagcgcgaagagcttc
aaggccttcgacgccgcgatgcgcgaacacaagtccaccgaggaactgcgcctggggtac
gtgaccttcacgcggcccaagcagttgctgatcgcgtccggccactggtgggggcgcacc
cgcaagaagccgcgcggcccgtccgaattcctgctgcggctcgccgagcactgcgaggcc
ggcgacggcgacatcctgacgtgggctcccgaacccaccgaaaccgacaacccgcacctg
ctcggcggggtcgagcacgcgtggccgctgccgctcgacgccgccgcgctggaggagcgc
cgccgcgcggcccgcgacgtcatcgacgaactggtccgcctcgaacaccgcgcacgcccg
gacacccccggcccgcgggggcccgctccatcggccggcaccgcaccggtcgcggccgtc
tccgacccgccggacgtgttcgcggacgacgagccgccgttccccgacgagccgccgccg
gacgaggaggagcttccgccgccgcccgaggacgacgggggcgcgggcggatggtgggac
gacggcccggacacggccgcggaggttcccgcggcgcgtcccgccgcggacgacaccgcc
gccgaacacgacggcgcggcgggcgcggacggtttcggagccgacgaccccgccccgccg
gcggacgcccccggtctcgccccgctccccgacgccgcggaggacaccgaccacctcggc
cccgccgaccgcgagttgatcgaatcgtgggaccaggacctcgaccgcctcgtcgaggaa
ctgctccgcgggcggtccggcgtccgcgacgtggacctgcccgcgtcgctgtccgcgtcg
caactgctgcggctggcctccgacccggacggcctggcccgcgagctggcccggcccatg
ccgcgcccgcccgcgcccgccgcccgccgcgggacgcggttccacgcctggatcgaggcg
cagttcggggagcgcccgctgctggagccggacgacctgcccggcgcggccgacgaggac
atcaccgacgaggcggatctggtcgaactgcagcaggcgttcctggcgaccccgtacgcc
cagcgggcgccgtaccgcatcgaggagtcgttccagctcgtgctgggcggccgggtcgtg
cgcgggcggatcgacgccgtctatcgggacgcggacggacgctacgaggtcgtcgactgg
aagaccaaccggtcgttcaacgccgacccgctccaactcgccgtgtaccgcctggcctgg
gccgagcgggccggcgtgcccccggacgaggtcaccgcgtcgttcgtctacgtccgatcg
ggtgaggtcgtccggccgcgcgggctgcccgaccgggccgggatcgaacgggtgctctcg
gggaagccgaagaccgacgtgtga
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