Yinghuangia sp. ASG 101: LO772_19315
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Entry
LO772_19315 CDS
T07749
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
yia
Yinghuangia sp. ASG 101
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yia03032
]
LO772_19315 (topA)
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_19315 (topA)
Enzymes [BR:
yia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LO772_19315 (topA)
DNA replication proteins [BR:
yia03032
]
Prokaryotic type
DNA Topoisomerases
LO772_19315 (topA)
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LO772_19315 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
TarS_C2
Motif
Other DBs
NCBI-ProteinID:
UGQ09109
LinkDB
All DBs
Position
4511652..4514480
Genome browser
AA seq
942 aa
AA seq
DB search
MSPSSETAREGSRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPAAYEGQ
PWARLGVNVDADFEPIYVVNSDKRQQVAKLRKLLKEADELFLATDEDREGEAIAWHLQQV
LQPKVPVRRMVFHEITKDAIRSAVANPRELNQRLVDAQETRRILDRLYGYEVSPVLWKKV
GPKLSAGRVQSVATRLVVERERERRAFRSASYWDVLGTFDTGRAGDATDPRTVNARLVGL
DGRRVATGRDFGPDGRLRNRDVLHVDETAARALAAALGTADFAVRAVERKPYRRSPYAPF
RTTTLQQEASRKLGLGAKATMQVAQKLYENGFITYMRTDSTTLSDTAVAAARAQVRELYG
AEYLPDAPRSYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWMRTVASQM
KDAVGQSVTVRIGGTAAEAENLPGRDAEFTASGKIITFHGFLKAYVEGSDDPDAELDDRE
RRLPMVEEGDPLTATELTPEGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDR
GYVFKKGTALVPSFIAFAVVGLLENHFGRLVDYDFTAKMEDDLDRIARGETQAVPWLRRF
YFGEDTPDGGDHLEGLKALVTDLGAIDAREVNSFPVGDGIVLRVGRYGPYVEQGDKRADV
PADLPPDELTVEKAEELLAKPTGDYVLGTDPATGHQIVAKNGRYGPYVTEVLPAPEEPAA
PEPAPDTDAGAAKTAAPKKTAKKTTRKTAKKAAAKGPKPRTASLLKSMSLDTVTLDDALR
LFSLPRVVGTDPQSGEEITAQNGRFGPYLKKGTDSRSLETEEQLFTVTLDEALAIYAQPK
KRGRAAAKPPLKELGTDPASGQPVVVKDGRFGPYVTDGETNATLRVADSVDAITPERAYE
LLAERRAQGPAPKKRAAAKAPAKKAPAKKTAARKKAPAKKAT
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
gtgtccccgagcagcgagaccgcgcgcgaaggcagtcgactcgtcatcgtcgagtcgccc
gccaaggcgaagacgatcaagggctacctcgggcccggctacgtggtcgaggccagcgtc
ggtcacatccgcgaccttccgaacggcgccgccgaggtccccgccgcctacgaaggccag
ccctgggcgcgcctcggcgtcaacgtcgacgccgacttcgagccgatctacgtcgtcaac
agcgacaagcgccagcaggtcgccaagctcaggaagctcctcaaggaagccgacgagctg
ttcctcgcgacggacgaggaccgcgagggcgaggccatcgcgtggcacctccagcaggtc
ctccagcccaaggtcccggtgcgccggatggtcttccacgagatcaccaaggacgccatc
cggtccgcggtcgccaacccgcgcgagctgaaccagcgcctggtcgacgcccaggagacc
cggcgtatcctcgaccggctctacggctacgaggtctcgccggtcctgtggaagaaggtc
ggccccaagctgtccgccggccgcgtgcagtccgtcgcgacgcgcctggtcgtcgagcgc
gagcgtgagcgccgcgcgttccgctccgcctcttattgggacgtcctcggcaccttcgac
accgggcgcgccggagacgccaccgacccccgtacggtcaacgcgcgcctggtcgggctc
gacggcaggcgcgtcgcgaccggccgcgacttcggccccgacgggcggctccgcaaccgc
gacgtcctgcacgtcgacgagaccgcggcccgcgccctcgcggcggccctcggaacggcc
gacttcgcggtgcgcgcggtcgagcgcaagccgtaccgccgctcgccgtacgcgccgttc
cgcaccaccacgctccagcaggaggcctcgcgcaagctgggcctcggtgccaaggcgacc
atgcaggtggcccagaagctgtacgagaacggcttcatcacctacatgcgaaccgactcc
accacgctgtccgacaccgccgtcgccgccgcccgcgcccaggtgcgcgagctgtacggc
gccgaatacctcccggacgcgccccggtcgtacgcgggcaaggtcaagaacgcccaggag
gcgcacgaggcgatccgcccctccggcgaccgcttccgcacccccgccgagaccggcctc
accggcgaccagttccgcctgtacgagctgatctggatgcgcaccgtcgcctcccagatg
aaggacgccgtcggccagtccgtgaccgtccgcatcggcggcaccgcggccgaggcggag
aacctgcccgggcgcgacgccgagttcaccgcgtccggcaagatcatcaccttccacggc
ttcctcaaggcgtacgtcgagggttccgacgaccctgatgccgagctggacgaccgcgag
cgccgcctgcccatggtcgaggagggcgacccgctcaccgcgaccgagctgacccccgaa
ggccacgccaccaagccgcccgcccgctacaccgaggcgtcgctcgtcaaggagctggag
gagcgcgagatcggccgcccgtcgacctacgcgtcgatcatcggcaccatcctcgaccgc
ggctatgtcttcaagaagggcaccgcgctggtcccctccttcatcgcgttcgccgtcgtc
ggcctcctggagaaccacttcgggcgcctggtcgactacgacttcaccgccaagatggag
gacgacctcgaccggatcgcccgcggcgaaacccaggcggtgccgtggctgcgccgcttc
tacttcggcgaggacaccccggacggcggcgaccacctcgaaggcctcaaggcgctggtg
accgacctcggcgcgatcgacgcccgcgaggtcaactccttccccgtcggcgacggcatc
gtgctccgcgtgggccgctacgggccgtacgtcgagcagggcgacaagcgcgcggacgtg
cccgccgacctgccgcccgacgagctgaccgtcgagaaggccgaggaactgctcgccaag
ccgaccggcgactacgtgctcggcaccgacccggcgaccggccaccagatcgtcgccaag
aacggccgctacggcccgtacgtcaccgaggtcctgcccgcacccgaggagcccgccgcg
cccgaacccgccccggacaccgacgcgggggcggcgaagacggccgcaccgaagaagacc
gccaagaagaccacccggaagaccgcgaagaaggccgccgccaagggaccgaagccgcgc
accgcgtcactgctcaagtcgatgtccctggacaccgtcacgctggacgacgccctcagg
ctgttctcgctgccgcgcgtggtcggcaccgacccgcagagcggcgaggagatcaccgcg
cagaacggccgcttcggcccctacctcaagaagggcaccgactcgcggtcgctcgaaacc
gaggagcagctcttcaccgtcaccctcgacgaggccctggccatctacgcgcagccgaag
aagcgcggccgtgccgccgccaaaccgccgctgaaggagctgggcaccgacccggccagc
ggtcagccggtggtcgtcaaggacggccggttcggcccgtacgtcaccgatggtgagacc
aatgccacgctgcgcgtcgccgacagcgtcgacgcgatcacgcccgagcgcgcctacgaa
ctgctcgccgagcggcgcgcgcagggccctgcacccaagaagcgggccgccgccaaggct
ccggccaagaaggcacccgcgaagaagaccgccgcccgcaagaaggcaccggcgaagaag
gccacctga
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