Yinghuangia sp. ASG 101: LO772_23955
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Entry
LO772_23955 CDS
T07749
Name
(GenBank) DNA glycosylase
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
yia
Yinghuangia sp. ASG 101
Pathway
yia03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LO772_23955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_23955
Enzymes [BR:
yia01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LO772_23955
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LO772_23955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
PknG_rubred
DUF2688
Motif
Other DBs
NCBI-ProteinID:
UGQ09931
LinkDB
All DBs
Position
complement(5587259..5588065)
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AA seq
268 aa
AA seq
DB search
MPEGDTVFQTATRLRGALAGRVLTRTDFRVPRHATADWSGRTVLGVVSRGKHLLLRVDGG
LTLHTRLGMPGAWRIRRASGRDAARPGSLGRDQVRVVLANDAYTALGMRLPVVELLGTAD
EERAVGHLGPDLLGPDWDADEAARRLAAQPARPIGEALLDQRNLAGVGNVYRAELCFLGG
VSPFARVDAAGDLRSLADLAHRALSANREHIGHVTTGDPRPGRENWVYGRAGRPCRRCGT
PIRRTEAGEPKRVVFWCPACQPAADDGR
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaggtgacacggtgttccagaccgcgacccggctgcgcggcgcgctcgccggc
cgggtgctgacgcggaccgacttccgggtgccgcgccacgcgaccgcggactggtccggc
cgtacggtgctcggcgtcgtctcgcggggcaaacacctgctgctgcgcgtcgacgggggc
ctgacgctgcacacgcgcctgggcatgcccggagcgtggcggatccgccgcgcatcgggc
cgcgacgccgcgcgtcccgggtccctcgggcgcgaccaggtgcgcgtggtcctggccaac
gacgcctacacggcgctgggcatgcgcctgccggtcgtcgagttgctggggaccgccgac
gaggagcgcgcggtcggccatctgggacccgacctgctcggcccggactgggacgcggac
gaagcggcccggcggctggccgcgcagccggcccggccgatcggcgaggccctgctcgac
cagcgcaacctcgcgggcgtcggcaacgtgtaccgcgccgagctgtgcttcctcggcggg
gtgtcgccgttcgcgcgcgtcgacgcggcgggcgacctgcgctcgctggcggacctcgcg
caccgcgcgctgtccgccaaccgcgagcacatcggccacgtcaccaccggggatccgcgc
ccggggcgggagaactgggtgtacggccgcgcgggacgcccgtgccgccgctgcgggacg
ccgatccgcaggaccgaggccggcgagccgaagcgtgtcgtgttctggtgcccggcgtgc
cagccggcggcggacgacggccggtga
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