Yinghuangia sp. ASG 101: LO772_31875
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Entry
LO772_31875 CDS
T07749
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
yia
Yinghuangia sp. ASG 101
Pathway
yia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LO772_31875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_31875
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LO772_31875
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LO772_31875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
UvrA_DNA-bind
AAA_16
AAA_29
RsgA_GTPase
nSTAND1
AAA_25
DnaJ_CXXCXGXG
AAA_23
RecA
Motif
Other DBs
NCBI-ProteinID:
UGQ11345
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Position
complement(7462150..7464768)
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AA seq
872 aa
AA seq
DB search
MRETTRQFDKLQEPLDVAPPLPDRQGGPALTASAADPAREGTNAGRESIDVVGARTNNLR
DVTVSIPRGRLVAFTGVSGSGKTSLAIDTLHSEAQLRYLEGLSPFVRQYITQRNRPKVDR
ILGLGATLAVDQRRLNRNPRSTVATITGIDGHLGLLYSRLPVLGADPATADGNGHLTTAH
FDRNTPEGSCAQCHGVGGHWQAQEDLIITRPELPLFDGASPWYAKWRSGEHSFIPALAEK
RGVDLGRPWQSLPEAFRRCVLYGTGDEVVEATVDIPNKNETARMTYTGSQPLRGALAEVE
RVFVNARTPGAKQRYLPYMRKRPCVTCGGDGYDRAARSVRLGGLAYPALLEVDVREVCGW
AECVAGELDARQRAVGEPLLWDLGRRLGILDRLGLSHLQLSRSAATLSGGELQRTRLAAQ
LCTELSGITFVLDEPGTGLHPADKSHLLDIALELREAGNTVLLVEHDPELIARADWVVDM
GPGAGRLGGEVLVSGPPAAVAAHPDSLTGRHLAGAEPRLRRTRRPVDDDNGWVELYGLRA
HNVVADLVRFPAGRLTCLTGVSGSGKSSLLGALGASVQAALAGTVDDSVREVGGLDAFGW
VAVVDQDPLGRTPRSNPATYSKAFDLVRKLFAETESARARGLDASWFSFNTADGGRCETC
TGYGRKLVDMHFLPDVWVVCDACEGRRYTPEALEITYRGLAVDQVLDLTVAEAVERLPEP
RQLAETLRSLEQVGLGYLQLGQSATELSGGEAQRLKLASAIRRGAAGRKAGLVVLDEPVS
GLHPSDVQRVVDALDVLVDSGNTVVVAEHDIPVAASADWVIDLGPGGGPGGGAVVAQGTP
ETVAAADTPTAGYLRRYAEGLPLLEVHQAARR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgaaaccacacggcaattcgacaagcttcaggagccgctcgacgtcgcaccgccg
ctccccgaccgacaaggcggaccagcgttgaccgcgtcagcggcagaccccgcgcgcgag
ggaaccaacgccggtcgcgagagcatcgacgtcgtgggagcgcgcaccaacaacctgcgc
gacgtcaccgtgagcatccccagagggcggctcgtcgccttcaccggcgtgagcggcagc
ggaaagacctccctcgcgatcgacacactgcacagcgaggcccaactgcgttatctggaa
gggctttcgccgttcgtacggcagtacatcacgcaacgcaaccgacccaaggtcgaccgc
atcctcggactcggcgcgacacttgccgtcgaccagcgtcgcctgaaccgcaacccgcgc
tccaccgtcgcgacgatcacgggcatcgacggacacctggggctgctctactcacgcctc
ccggtgctcggcgcggatccggcgacggccgacggcaacgggcacctgacgaccgcgcac
ttcgaccgcaacaccccggaggggagctgcgctcagtgccacggagtgggcggacactgg
caggcgcaggaggacctgatcatcacccgccccgaactcccgctcttcgacggggcgtcg
ccctggtacgccaagtggcggtccggtgagcactcgttcatcccggcgctcgccgagaag
cggggcgtggacctcgggcggccgtggcagtcgctgcccgaggcgttccgccgctgcgtg
ctgtacggcacgggtgacgaggtcgtggaggcgaccgtcgacataccgaacaagaacgag
acggcgcggatgacctacaccggaagccagccgctgcgcggcgcgctcgccgaggtggag
cgggtgttcgtgaacgcccggacgcccggcgccaagcagcgctacctgccgtacatgcgc
aagcggccgtgcgtcacctgcgggggcgacgggtacgaccgggcggcccggtcggtccgg
ctcggcggcctggcgtaccccgcgctcctggaggtggacgtccgcgaggtgtgcggctgg
gcggagtgtgtggcgggtgaactggacgcccggcaacgcgccgtgggcgagccactgctg
tgggacctgggccgccgactcggcatcctcgaccggctcggcctgtcccaccttcagctg
tcccggagtgcggcgacgctgtccggcggcgagttgcagcgaacgcggctcgccgcgcag
ctgtgcaccgagctgagcggcatcaccttcgtcctcgacgagcccgggaccgggctgcat
ccggcggacaagtcccacctgctcgacatcgccctggagttgcgcgaggccgggaacacc
gtgctcctcgtcgagcacgaccccgaactgatcgcccgggcggactgggtggtcgacatg
gggcccggtgccggccgcctcggcggcgaggtcctggtgtcgggtccgcccgccgccgtg
gccgcccacccggactcgctgaccgggcgccatctggccggcgcggagccccggctgcgc
cggacccgccgcccggtcgacgacgacaacggctgggtggagctgtacggcctgcgcgcc
cacaacgtggtcgccgacctcgtgcgattccccgccggccgactcacctgcctgaccggg
gtgagcggcagcgggaagagcagcctgctcggcgcgctcggtgcgagcgtccaggccgcg
ttggccggaacggtggacgactcggtgcgggaggtcggcggtctcgacgcgttcggctgg
gtcgcggtggtcgaccaggacccgctgggacgcacgccgcgctcgaacccggccacgtac
agcaaggcgttcgacctggtccgcaagctgttcgccgagacggaatcggcccgggcccgt
gggctcgacgcctcgtggttcagcttcaacacggccgacggcgggcgctgcgagacctgc
accggatacgggcgcaagctggtggacatgcacttcctgccggatgtgtgggtggtgtgc
gacgcgtgcgagggccggcgttacacgccggaggccctggagatcacctaccgtggcctg
gccgtcgaccaggtgctggacctgaccgtcgcggaggccgtggaacgtctccccgagcct
cggcagctcgcggagacactgagatctctggagcaggtcggcctcggctacctccaactc
ggccagagcgccaccgagttgtccggcggtgaggcacagcggctgaagctcgcgtccgcg
atccggcggggcgccgcgggccgcaaggccggcctcgtggtgctcgacgagccggtgtcg
gggctgcacccttcggacgtccagcgggtggtggacgcactcgatgtgctggtcgactcg
gggaacaccgtcgtcgtggccgaacacgacatccccgtggccgcctccgccgactgggtc
atcgacctggggccgggcggagggccgggcggaggggcggtggtcgcgcagggcaccccg
gaaaccgtcgcggcggcggacaccccgaccgccggatacctccgccggtacgcggaaggc
ctgccgctcctggaagtacaccaggccgcgcgccgctga
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