Yimella sp. cx-51: J5M86_00565
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Entry
J5M86_00565 CDS
T07124
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
yim
Yimella sp. cx-51
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yim03032
]
J5M86_00565
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_00565
Enzymes [BR:
yim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J5M86_00565
DNA replication proteins [BR:
yim03032
]
Prokaryotic type
DNA Topoisomerases
J5M86_00565
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J5M86_00565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CarbopepD_reg_2
Motif
Other DBs
NCBI-ProteinID:
QTH38223
LinkDB
All DBs
Position
complement(116337..117326)
Genome browser
AA seq
329 aa
AA seq
DB search
MPRLRKVSPTMRGYTRQRRGKGFSYADADGAALSAEDVERIKALVIPPAWQDVWICPLAN
GHIQATGMDAAGRRQYLYHPDWRIKRDKMKFDRVLTAAAGLPKARKQIVRDLSGEGMTLD
RASATAVRLIDLGYFRIGSDAYADTNGSFGLTTLERRHVKRGRDGLVFKFVGKSGVEHTV
TIDDKVAIEALDRMRSRRGGSGRLLAYKNGRSWVDLDAASVNAYLATLFGGDLTAKDFRT
WHATVLAAAALAESTENGDSKASRKRAVKAAVEEVATYLGNTPTVARGSYIDPRVLDLYE
SGTTITVPRTKSIEKRREALEKAVVELLA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcttcggaaggtctcgccgaccatgcgcggctacacccggcaacggcgcggc
aaggggttcagctacgcggacgccgacggcgccgcgctcagcgccgaagacgtcgagcgg
atcaaggcgctggtcattccgccggcctggcaggacgtttggatctgcccgctggcgaac
ggccacatccaggccacgggcatggacgccgccggacgtcggcagtacctctaccacccc
gactggcggatcaagcgcgacaagatgaagttcgaccgggtgctcaccgccgcggccggg
ttgcccaaggcgcgcaagcagatcgtccgcgatctgagcggtgagggcatgacgctcgac
cgggccagcgccaccgccgtccggctcatagatctcggctacttccgtatcggcagcgac
gcgtacgccgacaccaacggttcgttcgggctcaccacgttggagcggcggcacgtgaag
cgcggccgggacgggctggtattcaagttcgtcggcaagtcaggcgtcgaacacacggtg
accatcgacgacaaagtggcgatcgaggcgcttgatcgcatgcgttcgcggcgcggtggc
agtggccggctgctggcctacaagaacgggcgctcgtgggtcgatctggacgcagcgtcg
gtgaacgcttatctggcaacgcttttcggcggcgacctcaccgcgaaagacttccgcacc
tggcacgcgaccgtgctcgcggccgcggcgttggcggagtcgaccgagaacggcgacagc
aaggcgtcccgcaagcgcgcggtgaaggcggccgtcgaggaggtggccacctacctcggc
aatacaccgacggtggcgcgtggttcgtacatcgatccgcgggtgctcgacctctacgag
agcggcacgacgatcaccgtgccgaggacgaagagcatcgagaaacgccgggaagcgttg
gagaaggcagtggtcgaactgctggcgtag
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