KEGG   Yimella sp. cx-51: J5M86_02155
Entry
J5M86_02155       CDS       T07124                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
yim  Yimella sp. cx-51
Pathway
yim03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:yim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J5M86_02155 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yim03400]
    J5M86_02155 (ligD)
Enzymes [BR:yim01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J5M86_02155 (ligD)
DNA repair and recombination proteins [BR:yim03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J5M86_02155 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: QTH38501
LinkDB
Position
complement(443859..444764)
AA seq 301 aa
MAPEKVTVEVEGRTLGLSNLDKVLYPGTETTKGEVLHYYATVAPVLLPQMRDRPVTRIRF
PEGVGGISFFEKNLPSGAPEWLPRVTIGSHSSRGSGDSVTYPLVTNVAALTYLVNLASLE
LHVPQWQVQDDHPTNPDRLVVDLDPGAPAGLSECATLALAVRERLHTLGYDRTIPVTSGS
KGLQIYAALDGSQSSDEVRDGMRELAQALTRDLPDLVVWKMTTSLRKGKILLDWSQNVAA
KTTICPYSLRAKDRPTVAAPRTWQELEADDAAPGRLQQLDYEEVLDRLDKDGDLMESITE
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcaccggagaaagtgaccgtggaggtcgaggggcgcacgttgggattgtcgaacctc
gacaaggtgctctaccccggcaccgagaccaccaagggcgaggtattgcactactacgcc
acggtggcaccggtcttgctgccgcaaatgcgtgatcgcccggtcacccgcattcgtttt
cccgaaggcgtgggcggcatcagcttcttcgagaagaacctcccctccggggctccggaa
tggttacccagagtgacgatcgggtcacacagttcgcgcggaagtggcgattcagtcact
tacccactggtaacaaatgtggccgccctgacctatttggtcaatctcgcgtccctggaa
ctgcatgtgcctcaatggcaagtccaagacgatcatccgactaatcccgacagactggtc
gtagacctcgatccgggcgctccggccggattgtccgaatgcgccaccttggcgctcgct
gttcgtgaacgtctgcacaccctcggatacgaccgcacgattccggtcacttcaggaagc
aagggcctccaaatatatgccgcgttggacggcagccaatcaagtgacgaggtgcgggat
ggaatgcgcgaattggcgcaggccctgacccgcgatcttcccgacctggtggtgtggaag
atgaccaccagcctgcgcaaggggaagatcctgctcgactggtcgcagaatgtggccgcc
aagacgaccatctgcccttactcgttgcgggcgaaagaccgccccacggtggccgccccg
cgcacctggcaggaactggaggccgacgacgctgcccccggccgcctgcagcagctcgac
tacgaggaggtgctcgatcggctcgacaaggacggcgacctcatggagtcgatcactgag
tcctga

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